MethPhaser: methylation-based haplotype phasing of human genomes
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Jul 17, 2024 - Python
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haplotype-blocks
Here are 9 public repositories matching this topic...
LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.
linkage-disequilibrium population-genetics haplotype-blocks genome-wide-association-studies single-nucleotide-polymorphisms ld-analysis ld-statistics ld-visualization
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Dec 16, 2024 - Python
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
numpy array haplotypes bayesian-inference dna-sequences genotyping polyploidy haplotype-assembly haplotype-blocks polyploid-genotyping
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Sep 18, 2024 - Python
A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.
haplotypes genome-phasing haplotype-assembly phase-extender haplotype-extension phase-haplotypes reference-haplotype-panel haplotype-blocks
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Oct 30, 2024 - Jupyter Notebook
A pipeline for phasing haploptypes using short readbackphased haplotype blocks in population of samples.
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Sep 26, 2018 - TeX
A data and code repository for the paper of the same name.
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Apr 30, 2024
merge imputation plotting epistasis wgs structural-variation kinship microarrays haplotype-blocks local-ancestry
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Aug 26, 2021 - R
This method incorporates dense linkage disequilibrium block structure of SNPs for prioritizing a set of genetic variants using GWAS summary statisticis before performing fine-mapping.
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Jan 17, 2023 - HTML
PBWT-based algorithm for identifying all Maximal Perfect Haplotype Blocks with Wildcards
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Apr 3, 2023 - C++
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