Scripts for making chain file for mm10 - ms10 liftover

A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger

Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)

Inter-sample analysis of SQANTI classifications

work for creating hg38 database files from hg19 sources

Fast liftover

A Go-written server for 23andMe-formatted raw data liftover

A crate for working with genomics chain files.

Go Language implementation of LiftOver

Perform liftover on plink files

Lift same species genome co-ordinates from one assembly to another

Repository for miscellaneous bioinformatics scripts that may be useful to others.

Variant translation library for Clojure

a python pipeline to generate chain files between different genome assemblies for LiftOver.

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

An efficient genetic data imputation pipeline

Lifterover copy number segments in whole

A fast and efficient tool for converting chromatin interaction data between genome assemblies

liftover for python, made fast with cython

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.