Human survival post-LGM relied on adaptation, cooperation, and innovation. Neanderthal and Denisovan genes shaped immunity and metabolism, but uniform modern diets clash with these traits, fueling chronic disease. Embracing diversity can drive health and resilience.

An ontology for ocular immune-mediated inflammatory diseases

Search PubMed for Gene associations with Atherosclerosis

Code and data for the manuscript "Transcriptomic clustering of critically ill COVID-19 patients"

Analysis in the paper Mitra et.al. PNAS 2017.

Combined Ontology for Inflammatory Diseases

Scripts for the research paper "Unveiling CNS Cell Morphology with Deep Learning: A Gateway to Anti-Inflammatory Compound Screening"

PatientINF embedding models - with forum extraction and model building scripts.

scRNA-seq datasets to support Jung et al, Sci Adv, 7(6): eabe5735, 2021. DOI: 10.1126/sciadv.abe5735

Code for Jonsson*, Zhang*, et al, TteK (Granzyme K+ CD8 T cells), Science Translational Medicine, 2022: the core population of inflamed human tissue-associated CD8 T cells.

Metabolism of serum neurotransmitter precursors after COVID-19

This repository contains the code used for the data modeling and analysis presented in Kalb, Vo et al. Scientific Reports 11, 2021.