MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

Mapping the MIMIC-III database to the OMOP schema

Website for the MIMIC Critical Care Database (currently version MIMIC-III)

Introduction to MIMIC-III, the Critical Care Database

Toolkit for evaluating and monitoring AI models in clinical settings

Repository for the paper describing MIMIC-III

IJCAI2021: Code for SafeDrug, MIMIC data processing, Medical code mapping

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

Transthoracic echocardiography and mortality in sepsis: analysis of the MIMIC-III database

A python package for removing duplicate text in clinical notes or other documents

Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model

Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction

Code for the paper: Multi-Label Clinical Time-Series Generation via Conditional GAN (IEEE TKDE)

OMOP standardization pipeline for ICU databases

Rare disease identification from free-text clinical notes with ontologies and weak supervision

A Python library to load and analyze the MIMIC III Critical Care Database

Prediction of ICU Readmissions Using Data at Patient Discharge using MIMICIII Database

Repo for Oxygenation project proposed by KC at Datathon