✂️ ⚡ Rapid haploid variant calling and core genome alignment
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Jul 19, 2024 - Perl
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haploid
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Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
snps binary nexus vcf phylogenetics alignment fasta snapp phylip vcf-files polyploid haploid phylogenetic-analysis outgroup convert-snps vcf-format phylip-matrix diploid
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Jul 7, 2023 - Python
R haploid sperm/oocyte data imputation (rhapsodi). A package for analysis of low-coverage single-cell sequencing data from multiple gametes.
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Jul 25, 2022 - R
Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations
bioinformatics linkage-disequilibrium simulation population-genetics allele-frequencies haploid diploid wright-fisher-model
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Nov 9, 2022 - Jupyter Notebook
Analysis scripts for "A method for low-coverage single-gamete sequence analysis demonstrates adherence to Mendel's first law across a large sample of human sperm" https://elifesciences.org/articles/76383
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Aug 21, 2023 - R
Available at: https://clstacy.github.io/yeastKODoublingTimes/ . Doubling time estimates for haploid KO library, data from doi: 10.1093/g3journal/jkac240
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Dec 8, 2022 - HTML
Wrigh Fisherman Simulation for Haploid population
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Mar 29, 2018 - HTML
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