Scripts and data for the CoVaRR-Net Pillar 6 notebook
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Updated
Sep 18, 2024 - HTML
Scripts and data for the CoVaRR-Net Pillar 6 notebook
mGEMS Genomic epidemiology with mixed samples
Automated genomic analysis of SARS-CoV-2 sequence data
Nextstrain build for mpox virus
Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite
A GLUE project developed to support genomic surveillance of Rabies Virus (RABV).
Pathogen NGS Documentary
Official place for proposals and details around monkeypox virus lineage designations
BA.2.86 project with Sigal lab
Dr. Buqing Yi
Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023
Efficiently store FASTA sequences in sqlite compressed with sidecar zstd dictionary
Cluster Investigation & Virus Epidemiology Tool
Data used for analyses in "Genomic Surveillance Reveals Multiple Introductions of SARS-CoV-2 into Northern California" (Deng et al., Science, 2020) https://doi.org/10.1126/science.abb9263
Gallery for GEViT Project
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