GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data
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Feb 22, 2024 - Python
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de-bruijn-graphs
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Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
markov-chain motif dna fasta mass-spectrometry k-mer genome-analysis peptides de-bruijn-graphs fasta-sequences orf protein-sequence z-score directed-acyclic-graph overlap-graph cyclic-peptides cyclic-pattern
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Jan 28, 2021 - Python
Computational Biology Assignments
computational-biology edit-distance bwt dynamic-programming de-bruijn-graphs rosalind fm-index parsimony burrows-wheeler-transform eulerian-path overlap-graph
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Dec 21, 2017 - Python
Data Analysis for Genomics, De Bruijn Graph for Genome Assembly.
python bioinformatics programming genomics genome biology data-analysis problem-solving genome-assembly de-bruijn-graphs dna-sequences genomics-visualization biological-sequence-analysis sequential-biology
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Aug 26, 2023 - Python
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Aug 29, 2018 - Python
Data Analysis for Genomics, Euler Path for Genome Assembly.
python bioinformatics programming genomics biology data-analysis problem-solving genome-assembly de-bruijn-graphs dna-sequences euler-path biological-sequence-analysis
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Aug 26, 2023 - Python
Benchmarks and evaluation scripts for the Fulgor index.
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May 15, 2023 - Python
Data Analysis for Genomics, De Bruijn Graph Chain Merging Compacting.
python bioinformatics programming genomics data-analysis biological-data-analysis problem-solving genome-assembly de-bruijn-graphs dna-sequences euler-path velvet-noise merging-chains read-off-contigs biological-sequential-analysis velvet-assembler
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Aug 26, 2023 - Python
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