A simple pipeline for bacterial assembly and quality control
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Updated
Sep 18, 2024 - Nextflow
A simple pipeline for bacterial assembly and quality control
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
Outlier Detection Thresholding
In this repository I backup the pipelines I write for the project I am involved
Detect and quantify plasmid DNA contamination in sequencing data
GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) R-Shiny implementation.
Python package to calculate various sample contamination metrics.
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
Generate Coverage, Quality and Contamination metrics for Sequence data.
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
luftdaten script for raspberry with enviro+
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