Faster, better, smarter ecological niche modeling and species distribution modeling

Tools for Modeling Niches and Distributions of Species

virtualNicheR: creating virtual fundamental and realised niches

BioModelos is a collaborative online system to map species distributions. This repository stores functions to automate the construction of Species Distribution Models (SDM) from databases gathered, managed and curated by The Alexander Von Humboldt Institute and a network of experts in order to be evaluated and refined.

Pattern-oriented ensemble modelling and simulation (with spatially explicit populations)

Processing NEON soil microbe marker gene sequence data into ASV tables.

Calculating temperature and precipitation predictability at the global scale

An R package to get taxonomic and distribution data for the ~6500 vascular plants present in the Iberian Peninsula and Balearic Islands

📦 An R package compiling all steps of a bioregionalization workflow

Arctic Community Similarity using DNA Barcoding Data

RevBayes code used in McCullough et al. 2022 Systematic Biology

Spatial patterns in biodiversity change

Niche-based vulnerability of species and communities.

Analyzing the biogeographical accuracy of 🐠Finding Nemo🐡

This repository is a supplementary information repository from García-Merchán et al... 2020 publication.

Data, code & figures used to assess global patterns of potential thermal niche filling

Estimation of the number of colonization events between islands of the same archipelago for a species. It uses rarefaction curves to control for both field and genetic sample sizes as it was described in Coello et al. 2022 (doi:10.1111/jbi.14341).

Additional tools for spatial biodiversity analysis, extending the core gdm package functionalities. Based on Mokany et al. (2022).

Test the benefits and costs of proactively preparing for climate change-driven species shifts.