Amplicon sequence processing workflow using QIIME 2 and Snakemake

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

Dadaist2 🟨 Highway to R

Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project

Processing NEON soil microbe marker gene sequence data into ASV tables.

A repository with a general dada2 pipeline for amplicon processing

A metabarcoding pipeline for analysing Illumina amplicon data.

Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output

A pipeline to analyse marine fish amplicon data

Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.

all my dirty r-scripts

🌊 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM

A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.

Amplicon sequencing workflow with snakemake and dada2

Bioinformatic data analysis scripts and pipelines

A workflow for processing CCS reads of AMF to ASVs using DADA2

National workshop on microbiome informatics

En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.