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719 Open 1,043 Closed
719 Open 1,043 Closed
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Issues list

refactor/cleanup index creation code in commands.py
#3572 opened Mar 8, 2025 by ctb
add wheel building command to Makefile
#3571 opened Mar 8, 2025 by ctb
support more outputs from index command & add more on-disk index tests?
#3570 opened Mar 4, 2025 by ctb
1
Investigate coverage across FFI boundaries
#3569 opened Mar 4, 2025 by luizirber
add a hint so that sourmash gather does not do a prefetch for a particular db?
#3562 opened Mar 2, 2025 by ctb
supporting RocksDB-based RevIndex in the Python API and command line rust
#3558 opened Feb 27, 2025 by ctb
4
proper compilation of lib_lowlevel is confusing
#3557 opened Feb 26, 2025 by ctb
potential_false_negative column fyi Information that is interesting or useful
#3554 opened Feb 25, 2025 by bluegenes
Missing species designation when using sourmash lca classify on a Haemophilus influenzae
#3546 opened Feb 24, 2025 by replikation
2
update search documentation to make it clear what "query" and "subject" are
#3543 opened Feb 23, 2025 by ctb
update/upgrade picklist documentation
#3542 opened Feb 23, 2025 by ctb
Erroneous crosstalk between sourmash plugins and conda?
#3541 opened Feb 20, 2025 by ccbaumler
2
deprecate sourmash_plugin_containment_search and update search tutorial
#3540 opened Feb 20, 2025 by ctb
does tax metagenome work with output of tax annotate?
#3537 opened Feb 16, 2025 by ctb
exploring gather results in a more intuitive/friendly way plugin_todo Write a plugin for this!
#3536 opened Feb 16, 2025 by ctb
provide an improved human-readable output & exploration utility for taxonomy plugin_todo Write a plugin for this!
#3535 opened Feb 16, 2025 by ctb
2
tutorial: comprehensive taxonomic characterization of metagenome against eukaryotes + bacteria + archaea tutorial links to tutorials
#3534 opened Feb 15, 2025 by ctb
the best way to de-replicate denovo genome set
#3531 opened Feb 12, 2025 by yuzie0314
4
sourmash sig extract doesn't respect - for stdin?
#3527 opened Feb 10, 2025 by ctb
locations of genome & SRA sketches on farm fyi Information that is interesting or useful
#3524 opened Feb 4, 2025 by ctb
high-scaled RocksDB indices for all public metagenomes - locations on farm fyi Information that is interesting or useful
#3523 opened Feb 4, 2025 by ctb
1
explore supporting SQLite manifests in Rust
#3522 opened Feb 4, 2025 by ctb
how should we name & version our databases moving forward?
#3517 opened Feb 3, 2025 by ctb
5
Minhash scaling code does not return hashes for many sequences
#3516 opened Jan 31, 2025 by etongit
6
add new JOSS paper to bioconda links
#3514 opened Jan 27, 2025 by bluegenes
1
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