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@li-lab-mcgill

Li Lab McGill

McGill Computational Biology and Machine Learning Group

Popular repositories Loading

  1. mixehr mixehr Public

    C++ 16 2

  2. singlecell-deepfeature singlecell-deepfeature Public

    Single Cell Generative Adversarial Network (scGAN)

    Jupyter Notebook 13 5

  3. GAT-ETM GAT-ETM Public

    "Modeling electronic health record data using an end-to-end knowledge-graph-informed topic model" paper on Sci Rep (2022)

    Python 10

  4. BiTimelyGPT BiTimelyGPT Public

    Code for the paper "Bidirectional Generative Pre-training for Improving Healthcare Time-series Representation Learning"

    Python 8 1

  5. gtm-decon gtm-decon Public

    Python 7 4

  6. covid19_media covid19_media Public

    Python 6 2

Repositories

Showing 10 of 30 repositories
  • ECLARE Public
    Jupyter Notebook 0 0 0 0 Updated Mar 19, 2025
  • SpaTM Public

    Topic Models for Spatially Informed Transcriptomic Analyses

    C++ 0 MIT 0 1 0 Updated Feb 17, 2025
  • scGraphETM Public
    Python 0 MIT 0 0 0 Updated Feb 5, 2025
  • FedWeight Public

    Code for the paper "FedWeight: Mitigating Covariate Shift of Federated Learning on Electronic Health Records Data through Patients Re-weighting"

    Jupyter Notebook 0 0 0 0 Updated Feb 3, 2025
  • penprs Public Forked from shz9/penprs

    Penalized Regression for Inference of Polygenic Risk Scores

    Python 0 MIT 2 0 0 Updated Jan 23, 2025
  • TimelyGPT Public

    Public code for ACM-BCB 2024 paper TimelyGPT

    Python 1 0 0 0 Updated Nov 11, 2024
  • BiTimelyGPT Public

    Code for the paper "Bidirectional Generative Pre-training for Improving Healthcare Time-series Representation Learning"

    Python 8 1 0 0 Updated Aug 12, 2024
  • MixEHR-Nest Public
    Python 0 0 0 0 Updated Jul 16, 2024
  • MixEHR_Seed_Tutorial Public

    This tutorial is provided for the UK Biobank Data Training Workshop, Tokyo, Japan

    Jupyter Notebook 3 1 0 0 Updated Apr 29, 2024
  • MixEHR-SurG Public

    Code for MixEHR-SurG: a joint proportional hazard and guided topic model for inferring mortality-associated topics from electronic health records

    Python 0 0 0 0 Updated Dec 9, 2023
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