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Minimum prototype functionality to support pilot application #2

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danielinteractive opened this issue Sep 21, 2022 · 1 comment · Fixed by #4
Closed
7 tasks done

Minimum prototype functionality to support pilot application #2

danielinteractive opened this issue Sep 21, 2022 · 1 comment · Fixed by #4
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danielinteractive commented Sep 21, 2022 •
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Idea: take tern.mmrm as starting point and then adapt to tern.gee, since here we also have visits and covariance structures etc.

Includes:

  • different family/link are possible - work with 2 class levels : 1) GEE and 2) GEE.logistic e.g.
  • make it less automatic re: inclusion of arm*visit interaction?
  • tabulation of fixed effects and covariance matrix estimates
  • LS means:
    • make the LS means afterwards and not as part of the initial fit
    • tabulation specific per family, e.g. for GEE.logistic only for the beginning
  • switch to using the geeasy package
@danielinteractive danielinteractive self-assigned this Sep 21, 2022
@danielinteractive danielinteractive mentioned this issue Sep 28, 2022
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Reached out for help with matching SAS results in annennenne/geeasy#2

@shajoezhu shajoezhu added the sme label Oct 24, 2022
@danielinteractive danielinteractive mentioned this issue Oct 28, 2022
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shajoezhu added a commit to insightsengineering/teal.modules.clinical that referenced this issue Nov 30, 2022
@danielinteractive @shajoezhu
@mhallal1 @edelarua
add gee prototype module with example (#664)
0189b7a 
complements insightsengineering/tern.gee#2

Please don't update from main or merge. We want to base this on the
current release.

Signed-off-by: Joe Zhu <sha.joe.zhu@gmail.com>
Co-authored-by: Joe Zhu <sha.joe.zhu@gmail.com>
Co-authored-by: Mahmoud Hallal <86970066+mhallal1@users.noreply.github.com>
Co-authored-by: Emily de la Rua <59304861+edelarua@users.noreply.github.com>
Co-authored-by: Emily de la Rua <emily.de_la_rua@contractors.roche.com>
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2: Minimum prototype for pilot insightsengineering/tern.gee
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