2: Minimum prototype for pilot

[danielinteractive]

closes #2

[danielinteractive]

@cicdguy ok let me create the upstream branches for the other repos to fix the yaml's ...
now I remember why it would be great to avoid this in staged dependencies :-)

[danielinteractive]

@cicdguy we still get the nestcolor staged dependencies problem:

I already tried rerunning the checks but that does not help. any idea?

[cicdguy]

@walkowif - would you be able to assist with this? We're trying to resolve some cross-repo dependencies using staged.dependencies here.

[walkowif]

Looks like nestcolor was not added to DESCRPTION. After I added it, staged dependencies pass.

[shajoezhu]

lgtm! Thanks @edelarua and @danielinteractive
I think this is almost ready. approve this PR to unblock work as I am ooo this week. Thanks!

[shajoezhu]

hi @edelarua , could you resolve the conflict on this branch please. Thanks!

[edelarua]

@danielinteractive @shajoezhu Almost all checks are passing now except for the staged.dependencies check. I see that Dinakar opened a PR a while ago to add nestcolor as an upstream dependency for tern.gee (insightsengineering/nestcolor#36). Is this a dependency we still want to include?

[github-actions]

Code Coverage Summary

Filename            Stmts    Miss  Cover    Missing
----------------  -------  ------  -------  ---------
R/fit_gee.R            89       4  95.51%   101-104
R/gee_methods.R        24       1  95.83%   52
R/lsmeans.R            38       0  100.00%
R/tabulate_gee.R       54      19  64.81%   21, 28-48
TOTAL                 205      24  88.29%

Diff against main

Filename            Stmts  Miss    Cover
----------------  -------  ------  --------
R/fit_gee.R           +89  +4      +95.51%
R/gee_methods.R       +24  +1      +95.83%
R/lsmeans.R           +38  -       +100.00%
R/tabulate_gee.R      +54  +19     +64.81%
TOTAL                +205  +24     +88.29%

Results for commit: 2de0663

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

  1 files    4 suites   3s ⏱️
22 tests 21 ✔️ 1 💤 0 ❌
38 runs  37 ✔️ 1 💤 0 ❌

Results for commit 52dbb2a.

♻️ This comment has been updated with latest results.

[shajoezhu]

Hi @edelarua , I think we can keep nestcolor out for tern.gee for now. It is not doing any plotting, we can keep these dependency tree a bit simpler. Thanks!