0.5.3

What's Changed

• Fix bioformats2raw versions across environments by @StasMakarchuk in #149

Full Changelog: v0.5.2...v0.5.3

0.5.2

What's Changed

• Update docs by @dannda in #128
• update docs by @dannda in #129
• update docs by @dannda in #130
• Patch for Xenium software analyzer >= 2.0.0 by @prete in #131
• fix singularity profile by @dannda in #133
• 0.5.2 by @dannda in #134

Full Changelog: v0.5.1...v0.5.2

0.5.1

What's Changed

• Create release 0.5.1 by @davehorsfall in #127

Full Changelog: v0.5.0...v0.5.1

0.5.0

What's Changed

• Feat/write spatialdata by @dannda in #121
• Feat/multimodal by @dannda in #125
• Create release 0.5.0 by @davehorsfall in #126

Full Changelog: v0.4.1...v0.5.0

0.4.1

What's Changed

• Split and organise environment and container files by @davehorsfall in #115
• split sphinx actions to build and deploy by @dannda in #118
• add documentation on multimodal pipeline by @dannda in #116
• Create release 0.4.1 by @davehorsfall in #119

Full Changelog: v0.4.0...v0.4.1

0.4.0

What's Changed

• Add support for Xenium 1.3 outputs by @prete in #90
• add parameter to load raw count file from spaceranger output by @dannda in #91
• add consolidate_metadata param to process_h5ad by @dannda in #92
• update dev branch from main by @BioinfoTongLI in #94
• added conda env as an option by @BioinfoTongLI in #93
• Improve documentation by @davehorsfall in #101
• Multimodal test by @dannda in #107
• Resolve Multimodal support for pipeline by @davehorsfall in #97
• Create release 0.4.0 by @davehorsfall in #112

New Contributors

• @prete made their first contribution in #90

Full Changelog: v0.3.2...v0.4.0

0.3.2

What's Changed

• Bump 0.3.1 by @davehorsfall in #86
• add license to close #87 by @davehorsfall in #88
• Add license by @davehorsfall in #89

Full Changelog: v0.3.1...v0.3.2

0.3.1

What's Changed

• Upgrade build config by @dannda in #85
• load Xenium clustering into h5ad file by @BioinfoTongLI in #74

Full Changelog: v0.3.0...v0.3.1

0.3.0

What's Changed

• Manuscript prep by @davehorsfall in #73
• turn input path strings to file type by @dannda in #81
• add check for 'options' when adding files to view config by @dannda in #82
• Update process_spaceranger.py by @davehorsfall in #83
• Prep version bump by @davehorsfall in #84

Full Changelog: v0.2.0...v0.3.0

0.2.0

What's Changed

• add batch processing option to process_h5ad.py by @dannda in #47
• Docs and citation by @davehorsfall in #55
• Refactor by @dannda in #56
• Feat/add technologies by @dannda in #61
• multimodal draft v1 by @BioinfoTongLI in #66
• Multimodal integration by @dannda in #68
• Refactor to yaml input by @dannda in #69
• Preparation for WebAtlas manuscript by @davehorsfall in #70

Full Changelog: v0.1.0...v0.2.0