Prep version bump #84
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Patch `process_spaceranger.py` to support spacerangerr v1.2.0 and v2.0. This simply checks for "tissue_positions_list.csv" (v1.2.0) and if not present then "tissue_positions.csv" (v2.0.0) will be copied as "tissue_positions_list.csv"
turn input path strings to file type
add check for 'options' when adding files to view config
Codecov ReportPatch coverage:
❗ Your organization is not using the GitHub App Integration. As a result you may experience degraded service beginning May 15th. Please install the Github App Integration for your organization. Read more. Additional details and impacted files@@ Coverage Diff @@
## main #84 +/- ##
==========================================
- Coverage 37.17% 37.10% -0.07%
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Files 14 14
Lines 694 698 +4
==========================================
+ Hits 258 259 +1
- Misses 436 439 +3
☔ View full report in Codecov by Sentry. |
Update process_spaceranger.py
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