Merge branch 'dev' of github.com:haniffalab/sci-spatial-data into dev

docs/_sources/examples/visium.rst.txt

@@ -135,7 +135,7 @@ Make sure Docker Engine 20.10 later is installed on your computer by using the c
 .. code-block:: shell
    :caption: Input
 
-   wget https://www.something.com/WSSS_THYst9699525.tar.gz
+   wget https://storage.googleapis.com/haniffa-lab/resources/docs/webatlas/example-workflows/visium/WSSS_THYst9699525.tar.gz
    mkdir -p ./input/WSSS_THYst9699525
    tar -xzvf WSSS_THYst9699525.tar.gz -C ./input/WSSS_THYst9699525
 
@@ -232,4 +232,4 @@ at http://localhost:3000, and that CORS is enabled via the Access-Control-Allow-
 
 Start your web browser and open:
 
-https://webatlas.cog.sanger.ac.uk/dev/index.html?theme=dark&config=http://127.0.0.1:8080/lowerlimb-visium-WSSS_THYst9699525-config.json
+https://webatlas.cog.sanger.ac.uk/latest/index.html?theme=dark&config=http://127.0.0.1:3000/lowerlimb-WSSS_THYst9699525-config.json

docs/examples/visium.html

@@ -233,7 +233,7 @@ <h2>Steps to reproduce<a class="headerlink" href="#steps-to-reproduce" title="Pe
 <p><strong>#6. Download and extract the sample data</strong></p>
 <div class="literal-block-wrapper docutils container" id="id11">
 <div class="code-block-caption"><span class="caption-text">Input</span><a class="headerlink" href="#id11" title="Permalink to this code"></a></div>
-<div class="highlight-shell notranslate"><div class="highlight"><pre><span></span>wget<span class="w"> </span>https://www.something.com/WSSS_THYst9699525.tar.gz
+<div class="highlight-shell notranslate"><div class="highlight"><pre><span></span>wget<span class="w"> </span>https://storage.googleapis.com/haniffa-lab/resources/docs/webatlas/example-workflows/visium/WSSS_THYst9699525.tar.gz
 mkdir<span class="w"> </span>-p<span class="w"> </span>./input/WSSS_THYst9699525
 tar<span class="w"> </span>-xzvf<span class="w"> </span>WSSS_THYst9699525.tar.gz<span class="w"> </span>-C<span class="w"> </span>./input/WSSS_THYst9699525
 </pre></div>
@@ -331,7 +331,7 @@ <h2>Steps to reproduce<a class="headerlink" href="#steps-to-reproduce" title="Pe
 </div>
 <p><strong>#10. Explore data in your browser</strong></p>
 <p>Start your web browser and open:</p>
-<p><a class="reference external" href="https://webatlas.cog.sanger.ac.uk/dev/index.html?theme=dark&amp;config=http://127.0.0.1:8080/lowerlimb-visium-WSSS_THYst9699525-config.json">https://webatlas.cog.sanger.ac.uk/dev/index.html?theme=dark&amp;config=http://127.0.0.1:8080/lowerlimb-visium-WSSS_THYst9699525-config.json</a></p>
+<p><a class="reference external" href="https://webatlas.cog.sanger.ac.uk/latest/index.html?theme=dark&amp;config=http://127.0.0.1:3000/lowerlimb-WSSS_THYst9699525-config.json">https://webatlas.cog.sanger.ac.uk/latest/index.html?theme=dark&amp;config=http://127.0.0.1:3000/lowerlimb-WSSS_THYst9699525-config.json</a></p>
 </section>
 </section>