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implement cutadapt for Illumina, add read tracking, and tidy pacbio c… nf-core CI #155: Commit c30a875 pushed by cjfields
January 29, 2025 05:37 8m 59s dev
dev
January 29, 2025 05:37 8m 59s
fix name change for CI nf-core CI #154: Commit f6f7dd4 pushed by cjfields
January 29, 2025 00:44 11m 28s dev
dev
January 29, 2025 00:44 11m 28s
update parameter names nf-core CI #153: Commit ffd51fe pushed by cjfields
January 29, 2025 00:37 2m 47s dev
dev
January 29, 2025 00:37 2m 47s
add ITS test (NYI but largely in place) nf-core CI #152: Commit aad57c3 pushed by cjfields
January 26, 2025 22:56 41m 20s dev
dev
January 26, 2025 22:56 41m 20s
add updates to modules and workflows, and example params (NYI) for tw… nf-core CI #151: Commit 19a7621 pushed by cjfields
January 26, 2025 22:55 40s dev
dev
January 26, 2025 22:55 40s
add in code for revcomping primers; setup for cutadapt nf-core CI #150: Commit 11dcf3c pushed by cjfields
January 14, 2025 05:21 9m 40s dev
dev
January 14, 2025 05:21 9m 40s
add in alternative dada2 error functions (these require dplyr) nf-core CI #149: Commit e867f49 pushed by cjfields
January 13, 2025 23:21 9m 20s dev
dev
January 13, 2025 23:21 9m 20s
last subworkflow for now; will likely move chimera removal into anoth… nf-core CI #148: Commit cfd0f83 pushed by cjfields
January 13, 2025 23:21 52s dev
dev
January 13, 2025 23:21 52s
change process name in case we add in alternatives nf-core CI #147: Commit 30d80f0 pushed by cjfields
January 13, 2025 18:15 9m 21s dev
dev
January 13, 2025 18:15 9m 21s
add stub subworkflow for chimera detection/removal (NYI) nf-core CI #146: Commit 4fc8d27 pushed by cjfields
January 13, 2025 17:45 9m 59s dev
dev
January 13, 2025 17:45 9m 59s
remove check on 'when' which doesn't work nf-core CI #145: Commit e11200e pushed by cjfields
January 10, 2025 03:43 9m 2s dev
dev
January 10, 2025 03:43 9m 2s
get the skipping steps working partly nf-core CI #144: Commit a924ade pushed by cjfields
January 10, 2025 03:41 2m 17s dev
dev
January 10, 2025 03:41 2m 17s
placeholders for subworkflows nf-core CI #143: Commit 607c862 pushed by cjfields
January 8, 2025 23:33 9m 27s dev
dev
January 8, 2025 23:33 9m 27s
clean up read tracking nf-core CI #142: Commit 7464ec0 pushed by cjfields
January 8, 2025 22:02 10m 52s dev
dev
January 8, 2025 22:02 10m 52s
fix read tracking for now, but planfor an eventual refactor to track … nf-core CI #141: Commit 51e80e3 pushed by cjfields
January 8, 2025 22:00 2m 4s dev
dev
January 8, 2025 22:00 2m 4s
add ASV FASTA nf-core CI #140: Commit c2ef2d9 pushed by cjfields
January 8, 2025 04:52 10m 1s dev
dev
January 8, 2025 04:52 10m 1s
update pacbio tests nf-core CI #139: Commit 043ca73 pushed by cjfields
January 8, 2025 01:45 9m 49s dev
dev
January 8, 2025 01:45 9m 49s
basic SE Illumina works except read tracking, and PacBio trimming/fil… nf-core CI #138: Commit 5390fa2 pushed by cjfields
January 7, 2025 21:57 10m 31s dev
dev
January 7, 2025 21:57 10m 31s
remove dsl1; we can just move these over from the main branch nf-core CI #137: Commit 4828dbb pushed by cjfields
January 7, 2025 16:21 11m 42s dev
dev
January 7, 2025 16:21 11m 42s
actually run the test nf-core CI #136: Commit 417d678 pushed by cjfields
January 7, 2025 04:55 9m 54s dev
dev
January 7, 2025 04:55 9m 54s
fix species, addresses #50 nf-core CI #135: Commit 3cb8b82 pushed by cjfields
January 7, 2025 04:28 9m 5s dev
dev
January 7, 2025 04:28 9m 5s
comment out species until this works nf-core CI #134: Commit fbb5879 pushed by cjfields
January 7, 2025 00:41 11m 35s dev
dev
January 7, 2025 00:41 11m 35s
test species but with the right file and URL :P nf-core CI #133: Commit d4ee743 pushed by cjfields
January 7, 2025 00:03 9m 25s dev
dev
January 7, 2025 00:03 9m 25s
test species but with the right file this time nf-core CI #132: Commit 04a9b0f pushed by cjfields
January 6, 2025 23:48 9m 55s dev
dev
January 6, 2025 23:48 9m 55s
remove cruft; comment out species for now nf-core CI #131: Commit 65bd334 pushed by cjfields
January 6, 2025 22:49 9m 59s dev
dev
January 6, 2025 22:49 9m 59s