Releases: andim/pyrepseq
Releases · andim/pyrepseq
v1.5.1 Release
v1.5
v1.4.3
What's Changed
- Improve pc tests by @yutanagano in #31
- Catch import errors for optional dependencies by @andim in #35
- Fix bug in pcDelta when setting maxseqs by @yutanagano in #38
- Update README.md by @yutanagano in #40
- Improve cdr levenshtein by @yutanagano in #39
- Update tcrdist names to capitalised form (TCRdist) by @yutanagano in #43
- Bump patch to v1.4.3 by @yutanagano in #44
Full Changelog: v1.4.2...v1.4.3
Contributors
andim and yutanagano
Assets 2
Release 1.4.2
What's Changed
- Fix function call discrepancies between TcrMetric and Tcrdist variants
- Nearest-neighbor fix to TCRdist weighting of indels vs substitutions, renamed internal function 'symspell' -> 'symdel' for clarity
Release 1.4.1
- Bug fix for Cdr3Levenshtein metric and relatives: now no longer requires V gene data to function
- Bug fix for
pyrepseq.pc: now properly handles coincidence calculations accross multiple features
Release 1.4
New functionality:
- Full integration of flexible metric module throughout downstream functions (pcDelta, plotting etc.)
- added seqs to regex converter
Fixes:
- nn fixes for cross-set searches
New Contributors
- @rsaxena20 made their first contribution in #17
Full Changelog: v1.3...v1.4
Contributors
rsaxena20
Assets 2
Release 1.3
New functionality:
- fast symspell-based nearest neighbor finding
- adjacency graph community detection for TCR clustering
Breaking changes:
- renames submodule nearest_neighbor -> nn
Release 1.2.1
Updated pypi description and version bump
Release 1.2
Major updates:
- Scatter plots with density shading
- Fast near neighbor finding
Release 1.1
Major updates:
- Added gene name standardization using @yutanagano's tidytcell package: https://github.com/yutanagano/tidytcells
- Added unbiased estimator for the variance of Simpson's index (paper forthcoming!)
Contributors
yutanagano