Release 015 #286
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Release 015 #286
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…I#270) Co-authored-by: Vasu Jaganath <vasu.jaganath@axleinfo.com>
…lusAI#273) Co-authored-by: Vasu Jaganath <vasu.jaganath@axleinfo.com>
…olusAI#274) Co-authored-by: JesseMckinzie <jessemckinzie145@gmail.com>
Co-authored-by: JesseMckinzie <jessemckinzie145@gmail.com>
* replace --user-space-docker-cmd with --singularity * fix cwl-docker-extract
* singularity flag and cmd fix * fix checking for container_engine unlike docker on the platform --------- Co-authored-by: Vasu Jaganath <vasu.jaganath@axleinfo.com>
* Add flag to only compile workflow to cwl without running * Switch --generate_cwl_workflow to group_run * Add test for --generate_cwl_workflow * Update generate cwl test to use helloworld from tutorials --------- Co-authored-by: Sameeul Bashir Samee <sameeul@gmail.com>
…PolusAI#276) * add the logic of converting plugins (ICT) to CWL (CLT) and add a test for given wf.json * get output from /compile endpoint and run locally for CI * semi-fix the inline_cwl when using stock CLT names with REST API --------- Co-authored-by: Vasu Jaganath <vasu.jaganath@axleinfo.com>
* Remove error when looking for output in inputs * Fix bug when parsing outputs * Remove incorrect keys from ui in ICT dict * Add function to add missing inputs to nodes in wfb * Make UI optional in ict spec and remove ui if found * Add test for updating nodes in wfb payload * Update ui validation * Update wfb type to Json * Update wfb nodes before raw to lean * Remove update to ui before clt conversion * Move is_inlet inside of wfb fixing function * Check that plugins are in wfb data * Move schema validation to payload update function * Check if plugins are present in WFB data
Co-authored-by: Vasu Jaganath <vasu.jaganath@axleinfo.com>
…ler (PolusAI#284) * add user args for workflows built with python api * remove redundant io in main & remove irrelevant warning/exit in compiler --------- Co-authored-by: Vasu Jaganath <vasu.jaganath@axleinfo.com>
* add user args for workflows built with python api * remove redundant io in main & remove irrelevant warning/exit in compiler * Refactor some common transformations into post_compile --------- Co-authored-by: Vasu Jaganath <vasu.jaganath@axleinfo.com>
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Relase for pypi 015