Merge aerorahul:feature/s4 into develop #17
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* Revert old src/incmake/component_CCPP.mk * Got back src/incmake/component_CCPP.mk file * NEMSfv3gfs and FV3-MOM6-CICE5 moved to github * Change account number form FV3GFS-T2O to GFS-DEV on WCOSS machines.
…OAA-EMC#21) * minor updates to component*.mk files * Syno for ice_fraction and sea_ice_concentration * updated syno for ice-frac * * adding DATM-MOM6-CICE5 as a test * updating NEMSfv3gfs and FV3-MOM6-CICE5 to github URLs * adding extra platforms for some of the apps * fix divide by zero in non-CMEPS version of NEMS * update clean command for newest MOM6 * remove unintended changes Co-authored-by: Jessica Meixner <jessica.meixner@noaa.gov>
…cation (NOAA-EMC#23) 1. component_MOM6.mk sets the MOM6_MAKEOPT environment variable for compile.sh 2. component_CICE.mk sets the CICE_MAKEOPT environment variable for comp_ice.backend
* Add GNU LGPL * Fix typo in LGPL
* remove ice-ocean merge in prep_atm * remove atm-ocn in prep_atm;remove associated FBs * comment vs ifdef * remove unnecessary prep_atm merges * remove custom merges in prep_atm which are not needed when field name changes are made of fv3 side for import directly from cice * move sum(weights) into datm part of loop; add wgtp01 for netLW merge * remove unused code in prep_atm * use RWFields_tile for mediator dumps * clean up commented out code used for testing * add print statement of slow and fast counters for field dumping * more PET log info printout * add ability to write mediator a-o fluxes to file with statewrite_flag * return statewrite flags to their default setting * mediator aborts if a required mediator restart file does not exist * add condition of 'not coldstart' to mediator abort when mediator restart files are missing * change sw field names from cice * Add capablilty to build the CMEPS mediator in place of the NEMS mediator using 'ifdef CMEPS' conditionals in module_EARTH_GRID_COMP.F90 If CMEPS is built, the NUOPC field contained in parm/fd.yaml will be used.
…trings have to match (NOAA-EMC#42)
…elop (fixes problem with MPI_Comm_Split in openmpi when hash is negative) (NOAA-EMC#43) * fixes problem with MPI_Comm_Split in openmpi when hash is negative * removed redundant check on hash > 0 * hera.gnu config Co-authored-by: Mark A. Potts <mark.potts@noaa.gov> Co-authored-by: Mark Potts <mpotts@redlineperf.com>
* Set default values for model_configure variables (NOAA-EMC#18) RUN_CONTINUE = .false. ENS_SPS = .false. TOTAL_MEMBER = 1 * fixes problem with MPI_Comm_Split in openmpi when hash is negative * removed redundant check on hash > 0 * Add GNU LPGL (NOAA-EMC#32) * Add NEMS documentation (NOAA-EMC#33) * Add nems documentation in doc directory *Include in .gitignore NEMS/doc/html/ and NEMS/doc/webpage.tar.gz *Remove milestones.dox which is no longer needed *Modify Makefile to include doxygen command on Hera *Remove in prep_inputs.py two functions related to milestones * Remove webpage.tar.gz file * Update NEMS documentation *Add Doxyfile in NEMS/.gitignore * Update based on documentation meeting * Updates to the documentation (NOAA-EMC#35) * Documentation update (NOAA-EMC#36) * Modify license file (NOAA-EMC#37) * Modify license file * Fix typo in license Co-authored-by: Dusan Jovic <48258889+DusanJovic-NOAA@users.noreply.github.com> Co-authored-by: Mark A. Potts <mark.potts@noaa.gov> Co-authored-by: Mark Potts <mpotts@redlineperf.com> Co-authored-by: Mark Potts <33099090+mark-a-potts@users.noreply.github.com> Co-authored-by: arun chawla <49994787+arunchawla-NOAA@users.noreply.github.com>
* Point NEMS to a new pyprodutil branch which merges port-2-hera into develop * Point NEMS to NOAA-EMC/NCEPLIBS-pyprodutil develop
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This PR merges branch feature/s4 from @aerorahul into develop and updates/resets the submodule pointer for NCEPLIBS-pyprodutil (this update was missing in the feature/s4 branch).
See ufs-community/ufs-weather-model#98 for the associated PR for ufs-weather-model, which was pulled into ufs-community/ufs-weather-model#102.
Associated PRs:
NOAA-EMC/GFDL_atmos_cubed_sphere#17
NCAR/ccpp-framework#283
NCAR/ccpp-physics#436
NOAA-EMC/fv3atm#98
ufs-community/ufs-weather-model#102
For regression testing information, see below (STILL MISSING).