Extend max-min driving force analysis

[stelmo]

This version accepts "normal" models i.e. you don't have to make a custom model. As long as you have thermodynamic data for all the metabolites it will work. Improvements:

1. Accepts ΔG of reaction adjustments, this is useful to add transporter effects
2. Only uses ΔG of formation to calculate the unadjusted ΔG of reaction => ensures thermodynamic consistency
3. Uses a previous flux solution to set the sign of ΔG reaction => you can feed it any model and it should work
4. ΔG of formation accepts an error estimate => allows adjusting the ΔG formation used in calculating ΔG reaction
5. Add a variability analysis tool

This new version is pretty cool if I have to say so myself :)

[cylon-x]

🟢  Commit 8cb03e9 is formatted properly.

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Required formatting changes summary:

 test/analysis/max_min_driving_force.jl | 17 ++++++++++++++---
 1 file changed, 14 insertions(+), 3 deletions(-)

[cylon-x]

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Required formatting changes summary:

 test/analysis/max_min_driving_force.jl | 17 ++++++++++++++---
 1 file changed, 14 insertions(+), 3 deletions(-)

[cylon-x]

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[cylon-x]

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[stelmo]

There has been a substantial improvement in equilibrator_api with respect to the errors associated with this kind of analysis. Busy incorporating it.

[stelmo]

So I decided to remove the error estimates from the function because it might make more sense to just sample, the actual error analysis is more complicated than just box constraints...

[cylon-x]

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[codecov]

Codecov Report

Merging #519 (043f2aa) into develop (0079d0b) will increase coverage by 0.08%.
The diff coverage is 95.23%.

❗ Current head 043f2aa differs from pull request most recent head d585420. Consider uploading reports for the commit d585420 to get more accurate results

@@             Coverage Diff             @@
##           develop     #519      +/-   ##
===========================================
+ Coverage    90.85%   90.94%   +0.08%     
===========================================
  Files           67       67              
  Lines         1630     1656      +26     
===========================================
+ Hits          1481     1506      +25     
- Misses         149      150       +1     

Impacted Files	Coverage Δ
src/analysis/max_min_driving_force.jl	94.44% <95.23%> (+1.58%)	⬆️

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[cylon-x]

🟢  Commit 043f2aa is formatted properly.

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🟥  Commit d3103e9 requires formatting!

Required formatting changes summary:

 src/analysis/max_min_driving_force.jl | 19 ++++++++-----------
 1 file changed, 8 insertions(+), 11 deletions(-)

[cylon-x]

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