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2290 file replace#3579

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kcondon merged 195 commits intodevelopIQSS/dataverse:developfrom 2290-file-replaceIQSS/dataverse:2290-file-replaceCopy head branch name to clipboardJan 27, 2017

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Commits on Sep 21, 2016

• Moved isDuplicate method to datasetutility package. No changes to actual method. Added direct method for checking a single file--that's for #2290

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• created WorldMapPermissionHelper.java to move checks out of the DatasetPage. #2290

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• further updates, methods for api calls and file page

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• For #2290 and #2465. Move twoRavens code from dataset page to separate class

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Commits on Sep 22, 2016

• adding typo change before mucking up repo too much...

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• should have been in last commit with typo fix

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• Work in progress. Lots of debug stmts

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• almost to getting file to save. crashing on command submit. Need to check that the state of the Dataset is correct, etc

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Commits on Sep 23, 2016

• WARNING - NEEDS TO BE ADDED BACK. trying to avoid local error

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• proof of concept for api upload

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• basic concept working. need to add form upload + refactor

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Commits on Sep 26, 2016

• Adding attributes for #2290 -- attributes are described in #3220

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• add file replace attributes to the DataFile object #2290

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• Part of #2290. See 13 and 14 under comment 2290#issuecomment-249582593

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• merge with develop

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• container class for file add/replace steps. need to test tomorrow. #2290-api-replace

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Commits on Sep 27, 2016

• 2290- on our way. basic replace (w/o notifications) is working in AddReplaceFileHelper.java

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• working on replace example #2290

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• #2291 troubleshooting where file save is called from ingestServiceBean -- e.g. why is it not going through DataFileServiceBean.save

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• rootId now working via UI #2290

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• add API test to exercise rootDataFileId #2290

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Commits on Sep 28, 2016

• Almost there. Replace working for published version but not draft. #2290

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• basic replace working. #2290

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• check for differing content types #2290. needs testing

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• error check for running a replace on a file that is not in the most recently published Dataset--e.g. was deleted. #2290

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Commits on Sep 29, 2016

• DatasetPage.java was missing

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• Starting to move error messages to bundles. Prep for rest assured test. #2290

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Commits on Oct 3, 2016

• #3387 #2290 moved add/replace error messages to bundles. api endpoint for tests (to fake actual api upload)

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• Similar. #2290 #3387 - two additional error messages moved to the bundles

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• Part of #2290. starting basic ui test

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Commits on Oct 4, 2016

• #2290 - UI to test replace functionality

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• merging with develop for checksum change #2291

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Commits on Oct 6, 2016

• #2290 Set error if single replacement file ingests into multiple files. e.g. a .zip as a replacement

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• #2290 working example of @scolapasta configuration for file upload via API

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• #2290 - Use the FormDataBodyPart class to get the mime type of the uploaded file. e.g. formDataBodyPart.getMediaType().toString()

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Commits on Oct 7, 2016

• working on #2290

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Commits on Oct 11, 2016

• 2290 - serialization of DataFile and FileMetadata in order to return the file id

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• api endpoint for replace #2290

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• #2290 fix where not running 'major cleanup' when old file not in current dataset version

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• #2290 for UI - break down add/replace sequence into two methods

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Commits on Oct 13, 2016

• temp removed kick off of ingest until it is async. #2290

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• add API tests for file replace and native add #2290

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• Let add/replace tests pass by making person superuser

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Commits on Oct 14, 2016

• #2290 Fix for ingest issue. Two errors: (a) API bean was incorrectly stateless and (b) the dataset variable wasn't being updated after running the update dataset command. e.g. Passing non-peristed …

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• #2290 - Restructured so Replace only requires a FileId, not a Dataset ID and File Id

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• Moved add/replace API endpoints to correct paths. e.g. datasets/{id}/add and files/{id}/replace #2290

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• Fix to broken clean/build/compile on last commit #2290

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• #2290 json data in form param -- next try as data string

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• #2290 replace with data in JSON under a form param

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• #2290 add jsonData placeholder for 'add'

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• get file add/replace API tests working again #2290

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Commits on Oct 17, 2016

• remove old params from replace test util #2290

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• #2290 adjust api output to begin more tests. (still need to integrate with JsonPrinter but tests should still work

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• put 3354-alt-checksum.sql in upgrade_v4.5.1_to_v4.6.sql #3354

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• Part of #2290 tests and code re-adjustments for err messages.

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• test for unpublished file and bad file id #2290

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• Merge branch '2290-api-replace' of github.com:IQSS/dataverse into 2290-api-replace

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• #2290 test. attempt to replace deleted file that was previously published

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• #2290 test. try to add same file twice

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• #2290 test. try to replace file w/ different content type

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• #2290 tests. remove unused packages

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Commits on Oct 18, 2016

• #2290 signatures (but not implementation) for adding optionalFileParams: description, file tags, tabular tags

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• #2290, remove currently un-needed method

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• #2290 OptionalFileParams object to use for API when adding description, tags, etc

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• #2290 changed tabularTags to fileDataTags

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• #2290 Add descriptiona and tags via API for add/replace.

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Commits on Oct 19, 2016

• #2290 Tag fix to avoid adding duplicates

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• Add tag labels #2290 to output json

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• #2290 remove print statemetns

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• #1612 add dataset & dataverse info to API output

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• #1612 allow persistentId use for add file

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• #1612 documentation for adding a file

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• #1612 - allow adding file by persistent id + fixed tests

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• #1612 - documentation for file replace via API

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Commits on Oct 21, 2016

• Merge remote-tracking branch 'origin/develop' into 1612-api-add-file

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Commits on Oct 24, 2016

• Fix for #1612 multiple file upload'

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• #1612 - Test updated to reflect the API returning a list of files

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• #1612. In anticipation of API cleanup #3358, ability to add alternative status http error codes to add/replace api calls

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Commits on Oct 25, 2016

• #1612, merge with develop

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• #2290 add FileReplaceException

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• #1612 - remove commented out @test decorators

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• #2290, in progress....

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Commits on Oct 26, 2016

• #1641 - post code review. In addCategoryByName already checks for existing categories, remove it from this class. rename to

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• #1612 - post code review. For add file API endpoint, we now have the dataset object--pass directly to AddReplaceHelper instead of the id

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• #1612 - In OptionalFileParams, change 'tags' to 'categories'; also in tests

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• #1612 - Adding dataFileTags for a non-tabular file now returns an error message

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• #1641 Consolidate calls to UpdateDatasetCommand in step_070_run_update_dataset_command and step_080_run_update_dataset_command_for_replace

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• 1612 - switch to checking specific permission to checking perms on a command. Adjusted test as necessary

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• part of #1612 post code review. update native file API to include tags and categories. also hits #3067

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• Bundle-ize Find Dataset Error Messages

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• move removeDuplicates... method to Util

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• #1612 - Native JSON updated--tags and categories added. New endpoints use native JSON. GSON results removed

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• #1612 - removed okResponseGsonObject

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• Merge branch '1612-api-add-file' of github.com:IQSS/dataverse into 1612-api-add-file

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Commits on Oct 27, 2016

• Merge remote-tracking branch 'origin/develop' into 2290-file-replace

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• Merge remote-tracking branch 'origin/1612-api-add-file' into 2290-file-replace

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• #2290 Merge with file-metadata-provenance-2295 branch

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• #2290 remove message from data (whew) as per github thread in #3433 (comment)

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• #2290, move API message to proper place--leaving old one in for backward compat. for now. (need to swagger this stuff)

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• #2290, API file size check. Added downstream filesize check in the ingestService. Throw exception if file limit exceeded.

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Commits on Oct 31, 2016

• #2290, test code, starting work on UI

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Commits on Nov 1, 2016

• #2290 Fixed mydata. Was broken with change to ApiConfiguration.java

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• #2290 - Fix for WorldMapPermissionHelper.java and 'Map Data' not showing

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Commits on Nov 3, 2016

• work in progress. #2290

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• #2290 merge with develop

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• xhtml fragment with prov. graph example

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Commits on Nov 4, 2016

• #2290 basic mechanics working of UI file replace. Phase 1, then Phase 2 on Save

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Commits on Nov 7, 2016

• #2290 - example of changing label, description, restricted

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Commits on Nov 8, 2016

• #2290 remove extranneous <li> tags'

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• #2290 button to go to replace page (replace additions not yet checked in)

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• Added static wireframe for File Replace workflow to the Upload Files pg. [ref #2290]

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• #2290 - basic rendering last commit by @mheppler (helps with dev)

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• #2290 - line by line through editFilesFragment.xhtml. Currently can upload a new file and see it in table. refer to in progress functionality list: #2290 (comment)

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• #2290, #2565 Prevent 'NoResultException' on file landing page

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• #2290 - basic file replace working

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• #2290 - Delete working on the file replace page

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• #2290 file content type warning message now available in backing bean. Added 'isReplacementFile' to file.xhtml for dev purposes

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• #2290 code path for dropbox upload is in--not yet tested

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• #2290 fix for 'Replacment File' label on the file page

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Commits on Nov 14, 2016

• Merge branch 'develop' into 2290-file-replace

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Commits on Nov 28, 2016

• Merge branch 'develop' into 2290-file-replace

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Commits on Dec 5, 2016

• Adding TOA popup and fixing redirects.

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Commits on Dec 8, 2016

• Merged branch 'develop' into 2290-file-replace

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• Merge branch 'develop' into 2290-file-replace

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Commits on Dec 9, 2016

• Merge branch 'develop' into 2290-file-replace

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Commits on Dec 22, 2016

• Merge branch 'develop' into 2290-file-replace

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• Fix Edit Files Page Breadcrumbs

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Commits on Jan 3, 2017

• Added placeholder help text for Replace File section to the Dataset + File Management pg in the User Guide. [ref #2290]

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Commits on Jan 4, 2017

• Cleaned up UI, added page title and breadcrumb title to Replace File pg. Added description and tags, as well as commented out placeholders for dynamic thumbnail/icon. [ref #2290]

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Commits on Jan 5, 2017

• Fixed the page refresh issues for file uploads, in file replace mode.

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• Fixed the page refresh issues for file replace, 2.0.

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Commits on Jan 6, 2017

• revert 4.6 SQL script, move 4.6.1 to dedicated script #2290

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• fix REST Assured tests in FilesIT #2290

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• remove out of date todo from REST Assured test #2290

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• This makes sure that any dropbox upload-related error/warning messages are displayed in the proper place as well.

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• API tests to exercise setting file description and categories #2290

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• allow JSON to be passed in to file replace API #2290

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• put categories and tabular tags where we want them #2290

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• add tests for category and tabularTags #2290 #3067

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• This fixes the issue where you could not replace a published file when there was an already-existing draft version of the dataset.

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• exercise ability to add tabular tags via api (doesn't work) #2290 #3067

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• relates to pathToFile fix in ada7bdd #2290

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• let ingestService add files so we can set categories #2290 #3067

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Commits on Jan 9, 2017

• Moved text to bundle and inline styles to stylesheet from Replace File pg. [ref #2290]

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Commits on Jan 10, 2017

• file categories can be set via harvesting #2290

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• add test for small file upload (can not reproduce) #1719

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• #2290 Wire up File Replace Original File display

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Commits on Jan 11, 2017

• Update - Added File Replace guide text

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• Revised File Replace documentation.

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• #2290 Add warning popup when user tries to replace a file that has already been replaced

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Commits on Jan 12, 2017

• #2290 refresh fileUpload when replacement file is deleted.

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• Revised some message text for the Replace File pg. [ref #2290]

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• Minor revision to the User Guide for the Replace File feature. [ref #2290]

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Commits on Jan 13, 2017

• Merge branch 'develop' into 2290-file-replace #2290

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• prevent OptimisticLockException #3562 #2290

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• yellow warning on content type change, remove robotic text #2290

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• #2290 Cleanup and parasitize error messages

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• get tests passing again following bundle change #2290

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• clear warning message when file is deleted #2290

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• Merge branch 'develop' into 2290-file-replace #2290

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Commits on Jan 17, 2017

• fixes the issue where a duplicate of an existing file can be uploaded, in a published dataset with no existing draft. (#3571)

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• Reversed the order of duplicate checks in replace mode; to make error messages more accurate/informative.

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Commits on Jan 18, 2017

• #2290 Add replace file to version differences popup

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• #2290 Add PreviousDataFileId to cheap and easy File retrieval

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• Added the other new DataFile field, rootdatafileid, to the optimized, custom query-based methods in DataFileServiceBean.

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• #2290 - remove ui debug code.

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• Merge branch 'develop' into 2290-file-replace

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• #2290 Add Separate Div Header for Files Replaced Table

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• add more code coverage, ask about NullPointerException #2290

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• excercise duplicate "message" in JSON output #2290

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Commits on Jan 19, 2017

• Minor UI clean up on the dataset View Version Differences popup. [ref #2290]

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• API: revert the addition of duplicate "message" in JSON response #2290

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Commits on Jan 20, 2017

• fix guides to match api (POST vs PUT) #2290

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• remove "No JSON data" error on file replace #2290

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• Merge branch 'develop' into 2290-file-replace

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• Merge branch 'develop' into 2290-file-replace #2290

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Commits on Jan 23, 2017

• #2290 move file upload size error to bundle. Fix edit file breadcrumbs

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• #2290 Fix File retrieval for Breadcrumbs

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Commits on Jan 24, 2017

• Merge branch 'develop' into 2290-file-replace #2290

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• prevent NullPointerException #1612 #2290

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• Merge branch 'develop' into 2290-file-replace #2290

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• add curl examples for file add and replace #1612 #2290

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Commits on Jan 25, 2017

• Merge branch 'develop' into 2290-file-replace #2290

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Commits on Jan 26, 2017

• remove 8181 from example, add note about add under replace #2290 #1612

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• #2290 Don't allow user to edit files that have been replaced.

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• dv alias can't be just a number #211 #2290

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• fix typo in bundle and suggest adding a test #2290 #1612

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• Revised warning msg text for Edit button on File pg when file has been replaced, and styled replacement Edit button. [ref #2290]

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• avoid OptimisticLockException on publishing dataset #3562 #2290

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• test and document forceReplace #1612 #2290

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• Put the file size limit check into the FileUtil.createDataFiles().

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Commits on Jan 27, 2017

• Made sure any error messages coming from the FileUtil.createDataFiles() were properly

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• #2290 move different content type warning to info popup

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• #2290 finishing touches(?!) Edit button styling pop up message gb download format

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• #2290 remove extra line; fix spacing

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