Skip to content

Release v1.7.0
Compare
Choose a tag to compare
@github-actions github-actions released this 14 Apr 21:22
v1.7.0
cc13844

We are excited to announce the latest JBrowse release! This has many great
features including

  1. Floating feature labels, so if you are zoomed into the middle of a gene, the
    feature label hangs out alongside it on the left side of the screen! The
    results may not be pixel perfect in all cases (reverse complement labels can
    end up overlapping other features for example) but we hope this helps you
    see the labels for features that extend off the screen!

    Figure showing the feature labels floating alongside gene even when you are
    zoomed into the feature

  2. Upgraded build system for jbrowse-web and jbrowse-desktop to webpack 5, and
    added examples of using webpack 5 with embedded components. Webpack 5
    results in smaller build sizes for jbrowse-web. For a typical session,
    amount of .js downloaded with gzip enabled in v1.6.9 is ~1.4MB, in v1.7.0
    ~900kb (-500kb smaller). Without gzip enabled v1.6.9 4.8MB, v1.7.0 2.5MB
    (-2MB smaller). The result is largely due to better webworker bundling.

  3. Optimizations and improved visualization of paired-end reads in the
    breakpoint split view

  4. Optimized linear synteny renderings with long CIGAR strings. These
    optimizations help viewing large alignments such as the CHM13-T2T-v2.0
    assembly vs hg38 PAF file from https://github.com/marbl/CHM13#downloads
    (example here
    https://jbrowse.org/code/jb2/main/?config=test_data%2Fconfig_demo.json&session=share-0qD2-d_k4K&password=GF8Sk)

  5. The "Assembly selector" dropdown box now remembers your last selection, so
    you can more easily return to your genome of interest

🚀 Enhancement

  • Other
    • #2909 Add --prefixSize flag to @jbrowse/cli text-index (@cmdcolin)
    • #2887 Optimize filtering on alignments tracks (@cmdcolin)
    • #2879 Multi-level synteny rubberband (@cmdcolin)
    • #2874 Optimizations for rendering long syntenic alignments e.g. CHM13 vs GRCh38 (@cmdcolin)
    • #2872 Better connection between paired-end alignments in breakpoint split view and optimizations (@cmdcolin)
  • core
    • #2902 Standardize heights of widgets in LGV import form (@cmdcolin)
    • #2781 Add floating labels to SVG features (@cmdcolin)
    • #2875 Make assembly selector remember your last selected assembly (@cmdcolin)
    • #2860 Avoid performing many peekTransferables to optimize RPC serialization (@rbuels)

🐛 Bug Fix

  • Other
    • #2908 Fix AboutDialog under vite for embedded components (@cmdcolin)
    • #2900 Fix the 'Open assembly' menu item in jbrowse desktop (@cmdcolin)
    • #2882 Add padding at the bottom of the configuration editor to help color editing popup being cutoff (@cmdcolin)
    • #2877 Fix strand on arrows in horizontally flipped mode (@cmdcolin)
  • core
    • #2891 Use a user-supplied fetchESM callback to import ESM plugins to fix 'Critical dependency...' errors from embedded components (@cmdcolin)

📝 Documentation

🏠 Internal

  • core
    • #2904 Use a user-supplied fetchCJS callback to import CJS plugins (@cmdcolin)
    • #2891 Use a user-supplied fetchESM callback to import ESM plugins to fix 'Critical dependency...' errors from embedded components (@cmdcolin)
    • #2857 Refactor and improve types of OffscreenCanvas shim and ponyfill (@rbuels)
  • __mocks__, core

Committers: 3

Assets 14
Loading
0 Join discussion