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Merge pull request #98 from CGATOxford/group_sort_order
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added sort to group directional so that correct representative UMI is…
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@TomSmithCGAT
TomSmithCGAT authored Mar 22, 2017
2 parents 5772885 + 7188ffe commit 17b9e99
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Showing 13 changed files with 56,888 additions and 56,886 deletions.
27,744 changes: 13,872 additions & 13,872 deletions tests/group_dir.sam
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27,744 changes: 13,872 additions & 13,872 deletions tests/group_dir.tsv
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27,692 changes: 13,846 additions & 13,846 deletions tests/group_dir_py3.sam
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27,692 changes: 13,846 additions & 13,846 deletions tests/group_dir_py3.tsv
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684 changes: 342 additions & 342 deletions tests/group_dir_subset.sam
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684 changes: 342 additions & 342 deletions tests/group_dir_subset.tsv
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506 changes: 253 additions & 253 deletions tests/group_dir_subset_py3.sam
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506 changes: 253 additions & 253 deletions tests/group_dir_subset_py3.tsv
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130 changes: 65 additions & 65 deletions tests/group_dir_unmapped.sam
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130 changes: 65 additions & 65 deletions tests/group_dir_unmapped.tsv
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Expand Up @@ -1095,73 +1095,73 @@ NB501001:62:HLWYHBGXX:1:11101:1746:5817_TGTTGC chr2 33141308 TGTTGC 2 TGTTGC 2 1
NB501001:62:HLWYHBGXX:1:11101:25036:7289_TGTTGC chr2 33141308 TGTTGC 2 TGTTGC 2 1043
NB501001:62:HLWYHBGXX:1:11101:22755:7620_ACTTCT chr2 33141308 ACTTCT 2 ACTTCT 2 1044
NB501001:62:HLWYHBGXX:1:11101:6597:8201_ACTTCT chr2 33141308 ACTTCT 2 ACTTCT 2 1044
NB501001:62:HLWYHBGXX:1:11101:19874:5670_GGGTTG chr2 33141308 GGGTTG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:11785:7420_TGTGTG chr2 33141308 TGTGTG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:10542:1558_GGATTT chr2 33141308 GGATTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:12509:6910_GGCTTT chr2 33141308 GGCTTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:5567:5351_CCTCAT chr2 33141308 CCTCAT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:6483:3903_CGGTTT chr2 33141308 CGGTTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:1387:3045_GTGGTA chr2 33141308 GTGGTA 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:11668:4187_CGGGAA chr2 33141308 CGGGAA 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:16298:5581_GGCGAG chr2 33141308 GGCGAG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:23689:4353_TTGGTG chr2 33141308 TTGGTG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:4298:7359_GAAGTT chr2 33141308 GAAGTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:5151:5165_GGTGAG chr2 33141308 GGTGAG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:25472:3713_GGGAAG chr2 33141308 GGGAAG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:20904:4618_TGGGTT chr2 33141308 TGGGTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:3156:3139_GTTGTT chr2 33141308 GTTGTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:5476:8280_CGTGAA chr2 33141308 CGTGAA 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:9091:1768_GGCGCA chr2 33141308 GGCGCA 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:11269:1804_TGCGTT chr2 33141308 TGCGTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:22765:5504_CGTGTG chr2 33141308 CGTGTG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:26772:3662_GGCGGA chr2 33141308 GGCGGA 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:11960:2794_TTGGTC chr2 33141308 TTGGTC 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:18506:2912_AGCTTT chr2 33141308 AGCTTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:21260:7952_TGGGTG chr2 33141308 TGGGTG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:13119:1708_GTTGTA chr2 33141308 GTTGTA 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:9107:7901_TAGGTG chr2 33141308 TAGGTG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:6939:5282_GCTGAT chr2 33141308 GCTGAT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:15084:3827_TATTTT chr2 33141308 TATTTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:17089:6638_GGAGTT chr2 33141308 GGAGTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:19538:7351_GGTGAA chr2 33141308 GGTGAA 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:15529:1778_CCTGAT chr2 33141308 CCTGAT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:10035:1936_GTTGCG chr2 33141308 GTTGCG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:4319:7718_CAGGTG chr2 33141308 CAGGTG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:21087:6157_GTTTCG chr2 33141308 GTTTCG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:6499:5070_TAAGTT chr2 33141308 TAAGTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:2974:7822_GGTGTG chr2 33141308 GGTGTG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:4771:8135_CCTGTT chr2 33141308 CCTGTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:16537:1522_GGTGCG chr2 33141308 GGTGCG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:2419:2205_TGGTTG chr2 33141308 TGGTTG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:10305:1882_TGCTTT chr2 33141308 TGCTTT 2 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:1896:6573_TGCTTT chr2 33141308 TGCTTT 2 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:6030:4996_GGGATG chr2 33141308 GGGATG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:19838:6076_GGGGTT chr2 33141308 GGGGTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:22013:2113_GGTGCA chr2 33141308 GGTGCA 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:26214:6434_CGTCAT chr2 33141308 CGTCAT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:15357:1866_TGGTTT chr2 33141308 TGGTTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:25965:1875_CTTGTT chr2 33141308 CTTGTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:1343:4008_TGCTTC chr2 33141308 TGCTTC 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:12124:6267_GGTGAT chr2 33141308 GGTGAT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:24364:8057_TACTTT chr2 33141308 TACTTT 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:1499:2094_GGGGTG chr2 33141308 GGGGTG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:4441:7220_GGTTCG chr2 33141308 GGTTCG 1 GGGTTG 51 1045
NB501001:62:HLWYHBGXX:1:11101:10305:1882_TGCTTT chr2 33141308 TGCTTT 2 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:1896:6573_TGCTTT chr2 33141308 TGCTTT 2 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:19874:5670_GGGTTG chr2 33141308 GGGTTG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:11785:7420_TGTGTG chr2 33141308 TGTGTG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:10542:1558_GGATTT chr2 33141308 GGATTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:12509:6910_GGCTTT chr2 33141308 GGCTTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:5567:5351_CCTCAT chr2 33141308 CCTCAT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:6483:3903_CGGTTT chr2 33141308 CGGTTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:1387:3045_GTGGTA chr2 33141308 GTGGTA 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:11668:4187_CGGGAA chr2 33141308 CGGGAA 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:16298:5581_GGCGAG chr2 33141308 GGCGAG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:23689:4353_TTGGTG chr2 33141308 TTGGTG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:4298:7359_GAAGTT chr2 33141308 GAAGTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:5151:5165_GGTGAG chr2 33141308 GGTGAG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:25472:3713_GGGAAG chr2 33141308 GGGAAG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:20904:4618_TGGGTT chr2 33141308 TGGGTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:3156:3139_GTTGTT chr2 33141308 GTTGTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:5476:8280_CGTGAA chr2 33141308 CGTGAA 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:9091:1768_GGCGCA chr2 33141308 GGCGCA 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:11269:1804_TGCGTT chr2 33141308 TGCGTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:22765:5504_CGTGTG chr2 33141308 CGTGTG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:26772:3662_GGCGGA chr2 33141308 GGCGGA 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:11960:2794_TTGGTC chr2 33141308 TTGGTC 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:18506:2912_AGCTTT chr2 33141308 AGCTTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:21260:7952_TGGGTG chr2 33141308 TGGGTG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:13119:1708_GTTGTA chr2 33141308 GTTGTA 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:9107:7901_TAGGTG chr2 33141308 TAGGTG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:6939:5282_GCTGAT chr2 33141308 GCTGAT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:15084:3827_TATTTT chr2 33141308 TATTTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:17089:6638_GGAGTT chr2 33141308 GGAGTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:19538:7351_GGTGAA chr2 33141308 GGTGAA 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:15529:1778_CCTGAT chr2 33141308 CCTGAT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:10035:1936_GTTGCG chr2 33141308 GTTGCG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:4319:7718_CAGGTG chr2 33141308 CAGGTG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:21087:6157_GTTTCG chr2 33141308 GTTTCG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:6499:5070_TAAGTT chr2 33141308 TAAGTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:2974:7822_GGTGTG chr2 33141308 GGTGTG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:4771:8135_CCTGTT chr2 33141308 CCTGTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:16537:1522_GGTGCG chr2 33141308 GGTGCG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:2419:2205_TGGTTG chr2 33141308 TGGTTG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:6030:4996_GGGATG chr2 33141308 GGGATG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:19838:6076_GGGGTT chr2 33141308 GGGGTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:22013:2113_GGTGCA chr2 33141308 GGTGCA 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:26214:6434_CGTCAT chr2 33141308 CGTCAT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:15357:1866_TGGTTT chr2 33141308 TGGTTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:25965:1875_CTTGTT chr2 33141308 CTTGTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:1343:4008_TGCTTC chr2 33141308 TGCTTC 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:12124:6267_GGTGAT chr2 33141308 GGTGAT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:24364:8057_TACTTT chr2 33141308 TACTTT 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:1499:2094_GGGGTG chr2 33141308 GGGGTG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:4441:7220_GGTTCG chr2 33141308 GGTTCG 1 TGCTTT 51 1045
NB501001:62:HLWYHBGXX:1:11101:11266:6940_TTCATT chr2 33141308 TTCATT 2 TTCATT 2 1046
NB501001:62:HLWYHBGXX:1:11101:20966:6992_TTCATT chr2 33141308 TTCATT 2 TTCATT 2 1046
NB501001:62:HLWYHBGXX:1:11101:20908:7514_TAGGCT chr2 33141308 TAGGCT 1 TAGGCT 7 1047
NB501001:62:HLWYHBGXX:1:11101:22440:1087_AATGCT chr2 33141308 AATGCT 1 TAGGCT 7 1047
NB501001:62:HLWYHBGXX:1:11101:23370:7823_TTGGGT chr2 33141308 TTGGGT 1 TAGGCT 7 1047
NB501001:62:HLWYHBGXX:1:11101:16517:7745_TTGGCT chr2 33141308 TTGGCT 1 TAGGCT 7 1047
NB501001:62:HLWYHBGXX:1:11101:4694:6607_TATGCT chr2 33141308 TATGCT 1 TAGGCT 7 1047
NB501001:62:HLWYHBGXX:1:11101:16152:3466_TTTGGT chr2 33141308 TTTGGT 2 TAGGCT 7 1047
NB501001:62:HLWYHBGXX:1:11101:17495:4728_TTTGGT chr2 33141308 TTTGGT 2 TAGGCT 7 1047
NB501001:62:HLWYHBGXX:1:11101:26347:5413_ATGGGG chr2 33141308 ATGGGG 1 ATGGGG 7 1048
NB501001:62:HLWYHBGXX:1:11101:1166:6044_ATGTGG chr2 33141308 ATGTGG 1 ATGGGG 7 1048
NB501001:62:HLWYHBGXX:1:11101:12711:6210_AGGGGG chr2 33141308 AGGGGG 1 ATGGGG 7 1048
NB501001:62:HLWYHBGXX:1:11101:16618:7354_ATGTTG chr2 33141308 ATGTTG 1 ATGGGG 7 1048
NB501001:62:HLWYHBGXX:1:11101:6052:5966_CTGGGG chr2 33141308 CTGGGG 1 ATGGGG 7 1048
NB501001:62:HLWYHBGXX:1:11101:8660:2510_TTGTTG chr2 33141308 TTGTTG 2 ATGGGG 7 1048
NB501001:62:HLWYHBGXX:1:11101:6318:5064_TTGTTG chr2 33141308 TTGTTG 2 ATGGGG 7 1048
NB501001:62:HLWYHBGXX:1:11101:16152:3466_TTTGGT chr2 33141308 TTTGGT 2 TTTGGT 7 1047
NB501001:62:HLWYHBGXX:1:11101:17495:4728_TTTGGT chr2 33141308 TTTGGT 2 TTTGGT 7 1047
NB501001:62:HLWYHBGXX:1:11101:20908:7514_TAGGCT chr2 33141308 TAGGCT 1 TTTGGT 7 1047
NB501001:62:HLWYHBGXX:1:11101:22440:1087_AATGCT chr2 33141308 AATGCT 1 TTTGGT 7 1047
NB501001:62:HLWYHBGXX:1:11101:23370:7823_TTGGGT chr2 33141308 TTGGGT 1 TTTGGT 7 1047
NB501001:62:HLWYHBGXX:1:11101:16517:7745_TTGGCT chr2 33141308 TTGGCT 1 TTTGGT 7 1047
NB501001:62:HLWYHBGXX:1:11101:4694:6607_TATGCT chr2 33141308 TATGCT 1 TTTGGT 7 1047
NB501001:62:HLWYHBGXX:1:11101:8660:2510_TTGTTG chr2 33141308 TTGTTG 2 TTGTTG 7 1048
NB501001:62:HLWYHBGXX:1:11101:6318:5064_TTGTTG chr2 33141308 TTGTTG 2 TTGTTG 7 1048
NB501001:62:HLWYHBGXX:1:11101:26347:5413_ATGGGG chr2 33141308 ATGGGG 1 TTGTTG 7 1048
NB501001:62:HLWYHBGXX:1:11101:1166:6044_ATGTGG chr2 33141308 ATGTGG 1 TTGTTG 7 1048
NB501001:62:HLWYHBGXX:1:11101:12711:6210_AGGGGG chr2 33141308 AGGGGG 1 TTGTTG 7 1048
NB501001:62:HLWYHBGXX:1:11101:16618:7354_ATGTTG chr2 33141308 ATGTTG 1 TTGTTG 7 1048
NB501001:62:HLWYHBGXX:1:11101:6052:5966_CTGGGG chr2 33141308 CTGGGG 1 TTGTTG 7 1048
NB501001:62:HLWYHBGXX:1:11101:1144:3388_GTGCTC chr2 33141308 GTGCTC 1 GTGCTC 1 1049
NB501001:62:HLWYHBGXX:1:11101:23576:3659_ATTCGG chr2 33141308 ATTCGG 1 ATTCGG 2 1050
NB501001:62:HLWYHBGXX:1:11101:17198:7108_ATTCGT chr2 33141308 ATTCGT 1 ATTCGG 2 1050
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