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13 Open 482 Closed
13 Open 482 Closed
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Issues list

v1.1.5 kicking out one of pair of discordant reads ; v1.1.1 not showing same behaviour
#664 opened Oct 9, 2024 by alexander-e-f-smith
10
No v1.1.6 on conda, and only prebuilt for MacOS (no source) on pypi
#663 opened Oct 9, 2024 by eachanjohnson
3
UMItools extract with nanopore long reads
#661 opened Sep 4, 2024 by ctarpey
2
Issue with group and dedup option
#660 opened Aug 20, 2024 by LioLenr
Documentation improvement suggestion Documentation
#648 opened May 31, 2024 by hazmup
@IanSudbery
2
UMI-tool 1.1.5 not working with --per-gene --per-contig --gene-transcript-map Next release
#646 opened May 31, 2024 by pclavell
@TomSmithCGAT
6
provide an explicit list of cell barcodes to whitelist? Next release
#642 opened May 7, 2024 by bbimber
5
group method: not all UMI-containing reads assigned UG tag Documentation
#635 opened Mar 20, 2024 by epiliper
@TomSmithCGAT
7
Dedup errors if input BAM file is empty Next release
#624 opened Jan 24, 2024 by IanSudbery
2
Documenting algorithms Documentation
#423 opened Jul 13, 2020 by TomSmithCGAT
@TomSmithCGAT
umi_tools dedup: Incorrect output with using --paired
#347 opened Jul 5, 2019 by christianbioinf
2
10
Parallel deduplication
#203 opened Oct 19, 2017 by TomSmithCGAT
1 of 6 tasks
@TomSmithCGAT
5
Abstract core algorithm in to C library enhancement
#96 opened Mar 20, 2017 by IanSudbery
2 of 5 tasks
@IanSudbery
17
ProTip! Exclude everything labeled bug with -label:bug.