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Bilkent University CS 481 Bioinformatics Algorithms assignments

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hw2		hw2
hw3		hw3
hw4		hw4
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bioinformatics-algorithms

Bilkent University CS 481 Bioinformatics Algorithms assignments

HW1: Exact String Matching (C++)

Brute Force
Knuth-Morris-Pratt
Boyer-Moore
Rabin-Karp

HW2: Pattern Searching (Java)

Burrows-Wheeler Transformation
Ferragina-Manzini Index

HW3: Global and Local Alignments of Sequences (C++)

Needleman-Wunsch
Smith-Waterman

HW4: Multiple Sequence Alignment (C++)

Sequence to Profile Alignment

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Bilkent University CS 481 Bioinformatics Algorithms assignments

smith-waterman needleman-wunsch rabin-karp burrows-wheeler-transform knuth-morris-pratt exact-string-matching

GPL-3.0 license

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