bioinformatics-algorithms

Bilkent University CS 481 Bioinformatics Algorithms assignments

HW1: Exact String Matching (C++)

Brute Force
Knuth-Morris-Pratt
Boyer-Moore
Rabin-Karp

HW2: Pattern Searching (Java)

Burrows-Wheeler Transformation
Ferragina-Manzini Index

HW3: Global and Local Alignments of Sequences (C++)

Needleman-Wunsch
Smith-Waterman

HW4: Multiple Sequence Alignment (C++)

Sequence to Profile Alignment