Update tutorial for new VariantData format #767
Workflow file for this run
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name: Docs | |
on: | |
pull_request: | |
push: | |
branches: [main] | |
tags: | |
- '*' | |
env: | |
COMMIT_EMAIL: ben.jeffery.well+adminbot@gmail.com | |
MAKE_TARGET: all | |
OWNER: tskit-dev | |
REPO: tsinfer | |
jobs: | |
build-deploy-docs: | |
name: Docs | |
runs-on: ubuntu-latest | |
steps: | |
- name: Cancel Previous Runs | |
uses: styfle/cancel-workflow-action@0.12.1 | |
with: | |
access_token: ${{ github.token }} | |
- uses: actions/checkout@v4 | |
with: | |
submodules: true | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: "3.10" | |
- uses: actions/cache@v4 | |
id: venv-cache | |
with: | |
path: venv | |
key: docs-venv-v6-${{ hashFiles('requirements/CI-docs/requirements.txt') }} | |
- name: Create venv and install deps (one by one to avoid conflict errors) | |
if: steps.venv-cache.outputs.cache-hit != 'true' | |
run: | | |
python -m venv venv | |
. venv/bin/activate | |
pip install --upgrade pip wheel | |
pip install -r requirements/CI-docs/requirements.txt | |
# Tabix currently required for vcf conversion | |
conda install -c bioconda tabix | |
- name: Build C module | |
if: env.MAKE_TARGET | |
run: | | |
. venv/bin/activate | |
make $MAKE_TARGET | |
- name: Build Docs | |
run: | | |
. venv/bin/activate | |
eval "$(conda shell.bash hook)" | |
conda activate | |
cd docs && make dist | |
- name: Trigger docs site rebuild | |
if: github.ref == 'refs/heads/main' | |
run: | | |
curl -X POST https://api.github.com/repos/tskit-dev/tskit-site/dispatches \ | |
-H 'Accept: application/vnd.github.everest-preview+json' \ | |
-u AdminBot-tskit:${{ secrets.ADMINBOT_TOKEN }} \ | |
--data '{"event_type":"build-docs"}' |