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1. tskit tskit Public

   Population-scale genomics

   Python 163 74

2. msprime msprime Public

   Simulate genealogical trees and genomic sequence data using population genetic models

   Python 187 87

3. tsinfer tsinfer Public

   Infer a tree sequence from genetic variation data.

   C 58 14

4. tsdate tsdate Public

   Infer the age of ancestral nodes in a tree sequence.

   Python 20 10

5. tutorials tutorials Public

   A set of tutorials for msprime and tskit.

   Jupyter Notebook 20 15

6. tszip tszip Public

   Gzip-like compression for tskit tree sequences

   Python 5 7