Discussions

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  Simulatio to get heterozygosity of 0.5

  bistbs started Sep 4, 2024 in General · Closed

  

  

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  Msprime multiple roots?

  NewAtl asked Aug 1, 2024 in Q&A · Unanswered

  

  

  

  

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  best way to model admixture in final generation

  mshpak76 started Jul 31, 2024 in General

  

  

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  local extinction or extirpation

  alanrogers asked Jul 11, 2024 in Q&A · Answered

  

  

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  How to very quickly record marginal changes in tree height along a sequence?

  trevorcousins asked Apr 25, 2024 in Q&A · Unanswered

  

  

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  gene conversion rate f in ms vs msprime

  mshpak76 asked Mar 22, 2023 in Q&A · Unanswered

  

  

  

  

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  read a tree sequence into msprime ?

  eldonb asked Apr 2, 2024 in Q&A · Answered

  

  

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  simulating an admixture pulse in the recent past over a background of isolation-by-distance migration model

  VivaswatS started Feb 20, 2024 in General · Closed

  

  

  

  

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  Ancient samples that are directly ancestral to other samples

  apragsdale asked Feb 12, 2024 in Q&A · Answered

  

  

  

  

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  Stepping Stone model - Torus

  JaneeshBansal started Feb 12, 2024 in General

  

  

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  Wright Fisher forward time simulation with discrete generation feature

  NiharaDeSilva started Jan 31, 2024 in General

  

  

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  non-integer initial_size in add_population()

  mshpak76 started Jan 26, 2024 in General

  

  

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  Unexpected neutral theta using tskit-built tree sequences

  mawassw asked Jan 10, 2024 in Q&A · Unanswered

  

  

  

  

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  Adding mutations when using "num_replicates" and how to use demes format

  yzliu01 asked Dec 29, 2023 in Q&A · Answered

  

  

  

  

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  Empty demes in 2D stepping stone models

  connor-french asked Jan 5, 2024 in Q&A · Answered

  

  

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  Example to simulate multiple bottlenecks for a population over several time points

  yzliu01 started Oct 30, 2023 in General

  

  

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  Question Moved to tskit forum

  itsmestewart asked Oct 18, 2023 in Q&A · Closed · Unanswered

  

  

  

  

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  setting migration rates when obtaining demography from species tree

  richard-Hobart started Sep 7, 2023 in General

  

  

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  update entire initial_size matrix and/or migration rate matrix at once

  connor-french started Aug 16, 2023 in Ideas

  

  

  

  

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  Hi I wanted to ask if it is possible to read a .nwk file with msprime or tskit

  AyomideOjo started Jul 27, 2023 in General

  

  

  

  

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  How to generate offspring from a given set of individuals?

  petrelharp started Jul 6, 2023 in General

  

  

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  using psmc on msprime output

  alanrogers asked May 8, 2023 in Q&A · Answered

  

  

  

  

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  Migration matrices

  alanrogers asked May 8, 2023 in Q&A · Answered

  

  

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  X chromosome simulation

  AliPearson started Apr 18, 2023 in General

  

  

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  A question about interpretation of migration rates (slim vs. msprime)

  mshpak76 started Apr 18, 2023 in General

  

  

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