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WIB: Subcell limiting with IDP and MCL approach #1502

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WIB: Subcell limiting with IDP and MCL approach #1502

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Commits on Jul 5, 2023

  1. Fix format

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Commits on Jul 6, 2023

  1. Add note about togetherness of IDP limiter and correction callback

    @bennibolm
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  2. Rename antidiffusive correction stage callback

    @bennibolm
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  3. Rename file of antidiffusive correction stage callback

    @bennibolm
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Commits on Jul 7, 2023

  1. Relocate subcell limiting code

    @bennibolm
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Commits on Jul 10, 2023

  1. Move create_cache routine to specific file

    @bennibolm
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  2. Fix format

    @bennibolm
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  3. Merge branch 'main' into subcell-limiting

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Commits on Aug 9, 2023

  1. Implement suggestions

    @bennibolm
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  2. Remove outdated code

    @bennibolm
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  3. Merge branch 'main' into subcell-limiting

    @bennibolm
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Commits on Aug 10, 2023

  1. Merge branch 'main' into subcell-limiting

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Commits on Aug 21, 2023

  1. Merge branch 'main' into subcell-limiting

    @bennibolm
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  2. Reduce time of tests

    @bennibolm
    bennibolm committed Aug 21, 2023
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  3. Fix typo

    @bennibolm
    bennibolm committed Aug 21, 2023
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  4. Fix tests

    @bennibolm
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Commits on Sep 26, 2023

  1. Add two-sided limiting for conservative variables

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  2. Fix visualization routines

    @bennibolm
    bennibolm committed Sep 26, 2023
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  3. Add bounds calculation for BoundaryConditionDirichlet

    @bennibolm
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  4. Reduce cfl in elixir

    @bennibolm
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  5. Fix test

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    bennibolm committed Sep 26, 2023
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Commits on Sep 27, 2023

  1. Fix bounds check routine

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Commits on Sep 28, 2023

  1. Merge branch 'main' into subcell-limiting

    @bennibolm
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  2. Update tests after fixing conservation in main

    @bennibolm
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  3. Fix copy error

    @bennibolm
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  4. Implement variable_bounds as Dict with Symbols

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Commits on Oct 2, 2023

  1. Merge pull request #114 from bennibolm/subcell-limiting-dictionary 

    Implement variable_bounds as Dict
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Commits on Oct 5, 2023

  1. Added first (ugly) implementation of subcell limiting for non-conserv… 

    …ative systems

-> A working version of this implementation is added for the GLM-MHD system
-> The flux-differencing formula requires non-conservative terms of the
   form (local * symmetric)... I modified equations/ideal_glm_mhd_2d.jl and
   solvers/dgsem_tree/dg_2d.jl to make it work
-> In this first implementation, we only use the Powell term and
   deactivate the GLM term
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Commits on Oct 6, 2023

  1. Modified non-conservative fluxes to revert src/solvers/dgsem_tree/dg_… 

    …2d.jl back to its original state
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Commits on Oct 10, 2023

  1. Subcell limiting: Added the possibility to use multiple nonconservati… 

    …ve terms
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  2. Added some comments and improved formatting

    @amrueda
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  3. Added expected results for MHD subcell limiting test

    @amrueda
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  4. Restored old Powell source term and created a new function name for t… 

    …he modified Powell source term. This was needed due to incompatibility on non-conforming meshes.
    @amrueda
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  5. Fixed bug

    @amrueda
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  6. Fixed bug

    @amrueda
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Commits on Oct 11, 2023

  1. Moved new multiple-dispatch structs for to equations.jl

    @amrueda
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  2. Improved allocations

    @amrueda
    amrueda committed Oct 11, 2023
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  3. Avoid double computation of local part of non-conservative flux

    @amrueda
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  4. Improved subcell volume integral in y direction and formatting

    @amrueda
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Commits on Oct 12, 2023

  1. Apply suggestions from code review 

    Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>
    @amrueda @ranocha
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  2. Added timers and corrected docstrings

    @amrueda
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  3. Improved formatting

    @amrueda
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  4. Reduced testing time

    @amrueda
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  5. Merge branch 'subcell_limiting_noncons' into subcell_positivity_nonco… 

    …nservative and fixed some conflicts
    @amrueda
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  6. Deactivate bar states for subcell positivity MHD test

    @amrueda
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  7. The pressure positivity limiter works for MHD

    @amrueda
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  8. Allow arbitrary nonlinear positivity limiting

    @bennibolm
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  9. Implement changes for limiting of entropys

    @bennibolm
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  10. Relocate checks and goal functions

    @bennibolm
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  11. Merge branch 'main' into subcell-limiting-minmax

    @bennibolm
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  12. Rename functions

    @bennibolm
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  13. MCL works again FOR CONSERVATIVE SYSTEMS

    @amrueda
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  14. Merge branch 'main' into subcell-limiting

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Commits on Oct 13, 2023

  1. Merge branch 'subcell-limiting' into subcell-limiting-general-nonline… 

    …ar-limiter
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  2. Add @inline

    @bennibolm
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  3. Add @inline to checks and goal functions; Update test required

    @bennibolm
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  4. Update tests

    @bennibolm
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  5. Add comment about subcell limiting with non-conforming meshes

    @bennibolm
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  6. Merge branch 'subcell-limiting' into subcell_positivity_nonconservative

    @amrueda
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  7. Subcell limiting is working with StructuredMesh again

    @amrueda
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Commits on Oct 16, 2023

  1. Renamed variables for consistency

    @amrueda
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  2. Remove subcell visualization

    @bennibolm
    bennibolm committed Oct 16, 2023
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  3. Fix last commit

    @bennibolm
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  4. Remove @unpack

    @bennibolm
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  5. Add comment to News.md

    @bennibolm
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  6. Merge branch 'main' into subcell_limiting_noncons

    @amrueda
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  7. Fix source for sedov blast setup; Formatting

    @bennibolm
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  8. Removed some unnecessary operations in the Powell/GLM non-conservativ… 

    …e flux
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Commits on Oct 17, 2023

  1. Added two elixirs to compare performance

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  2. Merge branch 'subcell_limiting_noncons' into subcell_positivity_nonco… 

    …nservative
    @amrueda
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  3. Merge pull request #115 from bennibolm/subcell-limiting-general-nonli… 

    …near-limiter

Support nonlinear positivity limiting for arbitrary variables
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  4. Merge branch 'subcell-limiting' into subcell_positivity_nonconservative

    @amrueda
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Commits on Oct 18, 2023

  1. Reduce allocations

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Commits on Oct 20, 2023

  1. avoid repeated memory writing/reading

    @ranocha
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  2. format

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  3. Merge branch 'main' into subcell_limiting_noncons

    @ranocha
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  4. Replace construction of Symbols

    @bennibolm
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  5. Merge branch 'main' into subcell-limiting-minmax

    @bennibolm
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  6. Apply suggestions from code review 

    Co-authored-by: Benjamin Bolm <74359358+bennibolm@users.noreply.github.com>
    @amrueda @bennibolm
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  7. Merge branch 'main' into subcell-limiting

    @bennibolm
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  8. Fix 2 bugs + formatting

    @bennibolm
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  9. Remove interval from parameters

    @bennibolm
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  10. Fix bug

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Commits on Oct 22, 2023

  1. Add revised BoundsCheck for IDP Limiting

    @bennibolm
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  2. Fix bug

    @bennibolm
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  3. Add bounds check for local limiting

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Commits on Oct 23, 2023

  1. Merge branch 'main' into subcell_limiting_noncons

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  2. Merge branch 'subcell-limiting' into subcell_positivity_nonconservative

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  3. format

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  4. Replaced scalar-vector product with scalar-scalar product

    @amrueda
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  5. Removed timers that are not compatible with multi-threading

    @amrueda
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  6. Added bounds check for GLM-MHD subcell positivity example

    @amrueda
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  7. Removed unneeded elixirs

    @amrueda
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  8. format

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  9. Cherry-picked changes done in PR (#116) [a90745c] Apply suggestions f… 

    …rom code review

Co-authored-by: Benjamin Bolm <74359358+bennibolm@users.noreply.github.com>
    @amrueda @bennibolm
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  10. Renamed function dpdu

    @amrueda
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  11. Merge branch 'main' into subcell_limiting_noncons

    @sloede
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  12. Unified pressure derivative functions for the 2D Euler equations

    @amrueda
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  13. Apply suggestions from code review 

    Co-authored-by: Benjamin Bolm <74359358+bennibolm@users.noreply.github.com>
    @amrueda @bennibolm
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  14. Removed timers from MCL routines (not compatible with multi-threading)

    @amrueda
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Commits on Oct 24, 2023

  1. Merge branch 'main' into subcell-limiting

    @bennibolm
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  2. Renamed flux_nonconservative_powell2 to flux_nonconservative_powell_l… 

    …ocal_symmetric
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  3. Merge branch 'main' into subcell_limiting_noncons

    @amrueda
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  4. Add allocation tests to subcell simulation tests (only TreeMesh)

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  5. Fix allocations in SemiDiscEntropyLimiter

    @bennibolm
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  6. Increased maximum allowed allocation bound for subcell limiting simul… 

    …ation

Co-authored-by: Benjamin Bolm <74359358+bennibolm@users.noreply.github.com>
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  7. Added explanatory comments about different non-conservative fluxes an… 

    …d multiple dispatch
    @amrueda
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  8. Changed variable name noncons_term to nonconservative_term

    @amrueda
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  9. Update docstrin of flux_nonconservative_powell_local_symmetric 

    Co-authored-by: Michael Schlottke-Lakemper <michael@sloede.com>
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  10. Implement suggestions

    @bennibolm
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  11. Fix format

    @bennibolm
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  12. Renamed function nnoncons as n_nonconservative_terms

    @amrueda
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  13. format

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  14. Apply suggestions from code review 

    Co-authored-by: Michael Schlottke-Lakemper <michael@sloede.com>
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  15. Non-conservative subcell limiting cache only allocated for non-conser… 

    …vative equations

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  16. Merge branch 'main' into subcell_limiting_noncons

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Commits on Oct 25, 2023

  1. Merge branch 'main' into subcell-limiting-minmax

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  2. Merge branch 'main' into subcell-limiting

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  3. Merge branch 'subcell-limiting' into subcell_positivity_nonconservative

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  4. Merge branch 'subcell_limiting_noncons' into subcell_positivity_nonco… 

    …nservative
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  5. Add allocation tests for StructuredMesh

    @bennibolm
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  6. Merge branch 'subcell-limiting' into subcell_positivity_nonconservative

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Commits on Oct 31, 2023

  1. Merge branch 'main' into subcell_positivity_nonconservative

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  2. format

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  3. Updated the reference solution of some subcell limiting tests

    @amrueda
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  4. Add memory allocation test 

    Co-authored-by: Benjamin Bolm <74359358+bennibolm@users.noreply.github.com>
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Commits on Nov 2, 2023

  1. Merge branch 'main' into subcell-limiting-minmax

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  2. Add subcell allocation tests; Add changes to minmax limiter

    @bennibolm
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  3. Undo changes in elixirs

    @bennibolm
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  4. Merge pull request #116 from amrueda/subcell_positivity_nonconservative 

    Add support for non nonconservative equations to subcell-limiting
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  5. Merge branch 'main' into subcell-limiting

    @bennibolm
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  6. Implement suggestions

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Commits on Nov 3, 2023

  1. Skip positivity limiting if local limiting is more restrictive

    @bennibolm
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  2. Reduce allocations

    @bennibolm
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  3. Add unintentionally removed lines

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Commits on Nov 6, 2023

  1. Merge branch 'main' into subcell-limiting-minmax

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  2. Revise bounds check for MCL (#118) 

    * Revise bounds check for MCL

* Rename `idp_bounds_delta` for MCL to `mcl_bounds_delta`

* Remove comment

* Fix allocs (trixi-framework#1695)

* Fix allocs

* remove unnecessary code

* rerun fmt

* format

* Allocation tests dgmulti 2d (trixi-framework#1698)

* HLLE CEE 2D3D NonCartesian Meshes (trixi-framework#1692)

* HLLE CEE 2D3D NonCartesian Meshes

* format

* hlle via hll

* format test

* format test

* format

* do not export hlle

* Correct test vals

* test values CI

* Update src/equations/compressible_euler_2d.jl

Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>

* Update src/equations/compressible_euler_1d.jl

Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>

* Update src/equations/compressible_euler_2d.jl

Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>

* Update src/equations/compressible_euler_3d.jl

Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>

* Update src/equations/compressible_euler_3d.jl

Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>

* apply suggestions

* additional sentence

* Fix typo

* typos

* correct test vals

---------

Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>

* Bump crate-ci/typos from 1.16.15 to 1.16.21 (trixi-framework#1700)

Bumps [crate-ci/typos](https://github.com/crate-ci/typos) from 1.16.15 to 1.16.21.
- [Release notes](https://github.com/crate-ci/typos/releases)
- [Changelog](https://github.com/crate-ci/typos/blob/master/CHANGELOG.md)
- [Commits](crate-ci/typos@v1.16.15...v1.16.21)

---
updated-dependencies:
- dependency-name: crate-ci/typos
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Add NumFOCUS + ACTRIX to acknowledgments (trixi-framework#1697)

* Add NumFOCUS + ACTRIX to acknowledgments

* Try to avoid spaces

* Another try to avoid gaps between images

* Hopefully fix image alignment in docs

* Try new logo formats

* Use smaller DUBS logo and add DUBS funding statement

* Add markdown-based table for logos in docs

* Try another table approach

* Hopefully get a layout that finally *works*...

* Arrrrrrgggggghhhhh

* format examples (trixi-framework#1531)

* format examples

* check formatting of examples in CI

* update style guide

* fix weird formatting

* fix formatting of binary operators

* format again

* Update differentiable_programming.jl (trixi-framework#1704)

* Format subcell elixirs

* Add warning for missing bounds check for entropy limiter (MCL)

---------

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Daniel Doehring <daniel.doehring@rwth-aachen.de>
Co-authored-by: Hendrik Ranocha <ranocha@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Michael Schlottke-Lakemper <michael@sloede.com>
Co-authored-by: ArseniyKholod <119304909+ArseniyKholod@users.noreply.github.com>
    @bennibolm @DanielDoehring
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  3. Remove doubled tests

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  4. Merge branch 'main' into subcell-limiting

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Commits on Nov 7, 2023

  1. Pass variable as strings instead of indices

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  2. Update test to new passing structure

    @bennibolm
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  3. Pass variables as strings instead of ints

    @bennibolm
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  4. Add _nonperiodic to elixir name

    @bennibolm
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  5. Merge branch 'main' into subcell-limiting-minmax

    @bennibolm
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  6. Format

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  7. Fix unit test

    @bennibolm
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  8. Fix unit test

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Commits on Nov 8, 2023

  1. Implement suggestions

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  2. Merge changes from branch 'subcell-limiting-minmax'

    @bennibolm
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  3. Clean up

    @bennibolm
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Commits on Nov 9, 2023

  1. Add missing comma in bounds check exportation

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  2. Reduce allocations in calc_variable_bounds! for IDP

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Commits on Nov 13, 2023

  1. Use thread parallelization for reset of alphas

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  2. Reduce weird allocation when using thread parallelization

    @bennibolm
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  3. Merge branch 'main' into subcell-limiting

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Commits on Nov 14, 2023

  1. Clean up branch with main

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  2. Remove deleted tests

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  3. Change order of test as in main

    @bennibolm
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  4. Add positivity limiting of non-linear variables

    @bennibolm
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  5. Rename MCL parameters (#119)

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Commits on Nov 16, 2023

  1. Revise derivative function call; Add default derivative version

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  2. Adapt test to actually test pos limiter for nonlinear variables

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  3. Add unit test to test default implementation of variable_derivative

    @bennibolm
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  4. Clean up some stuff

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Commits on Nov 17, 2023

  1. Merge branch 'main' into subcell-limiting-positivity-nonlinear

    @bennibolm
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  2. Merge changes from subcell-limiting-positivty-cons-structured

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  3. Add comments

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Commits on Nov 20, 2023

  1. Extract inner code of entropy limiters due to dispatching

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  2. Fix blast wave test

    @bennibolm
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  3. Format

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  4. Merge branch 'main' into subcell-limiting-positivity-nonlinear

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  5. Fix entropy limiter for StructuredMesh

    @bennibolm
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  6. Fix typo

    @bennibolm
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  7. Merge branch 'main' into subcell-limiting

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  8. Clean up comments and code

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Commits on Nov 22, 2023

  1. Add approved changes from P4estMesh PR

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  2. Merge branch 'main' into subcell-limiting

    @bennibolm
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  3. Clean up routine get_boundary_outer_state

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  4. Format

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Commits on Nov 23, 2023

  1. Fix test

    @bennibolm
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  2. Speed up bar states bounds calculation of entropies (#120) 

    * Speed up bar states bounds calculation of entropies

* Format

* Implement suggestions
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Commits on Nov 27, 2023

  1. Merge branch 'main' into subcell-limiting

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  2. Merge branch 'main' into subcell-limiting-positivity-nonlinear

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Commits on Nov 28, 2023

  1. Fix normalization for Charactersitics and slip wall

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  2. Fix elixirs and tests

    @bennibolm
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Commits on Dec 3, 2023

  1. Merge branch 'main' into subcell-limiting

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  2. Add verified changes from P4estMesh PR

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Commits on Dec 4, 2023

  1. Merge branch 'main' into subcell-limiting

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  2. Fix bug

    @bennibolm
    bennibolm committed Dec 4, 2023
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  3. Adapt tests to reduce compilation time

    @bennibolm
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  4. Format

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Commits on Dec 5, 2023

  1. Add support for P4estMesh to subcell-limiting (#121) 

    * Add support for P4estMesh to `subcell-limiting`

* Add elixir with supersonic flow

* Extract inner code of `characteristic_boundary_value_function`

* Add support for `BoundaryConditionDirichlet` for P4estMesh

* Fix calculation of `vn`

* Remove default routine for `get_boundary_outer_state`

* Revise calculation of bar states

* Fix allocations with `foreach(enumerate(...))`

* Fix normalization in `get_boundary_outer_state`

* Add TODO note for future

* Remove unnecessary code; format

* Adapt test errors after normalizing normal vectors

* Add dispatch for equations

* Fix normalization; Is done inside boundary_value_function

* Fix bug in calculation of bar state at interfaces for P4estMesh

* Add mesh as parameter of `get_boundary_outer_state`
- Fixes bug that P4estMesh calls the right `characteristic_boundary_state` routine

* Add p4est double mach elixir

* Fix error

* Remove comment

* Add test for supersonic flow

* fmt

* Add comments

* Update src/equations/compressible_euler_2d.jl

Co-authored-by: Andrés Rueda-Ramírez <aruedara@uni-koeln.de>

* fmt

* Fix error

---------

Co-authored-by: Andrés Rueda-Ramírez <aruedara@uni-koeln.de>
    @bennibolm @amrueda
    bennibolm and amrueda committed Dec 5, 2023
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Commits on Dec 6, 2023

  1. Add entropy limiting to elixir

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  2. Add elixirs and tests for MCL on P4estMesh

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  3. Fix test

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  4. Merge branch 'main' into subcell-limiting-positivity-nonlinear

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  1. Merge branch 'main' into subcell-limiting-positivity-nonlinear

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  2. Rename Newton-bisection variables

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  1. Implement suggestions

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  2. Merge branch 'main' into subcell-limiting-positivity-nonlinear

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  1. Merge branch 'main' into subcell-limiting-positivity-nonlinear

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  1. Merge branch 'main' into subcell-limiting-positivity-nonlinear

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  1. Merge branch 'main' into subcell-limiting-positivity-nonlinear

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  1. Merge branch 'main' into subcell-limiting-positivity-nonlinear

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  1. Merge branch 'main' into subcell-limiting-positivity-nonlinear

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  2. Merge branch 'main' into subcell-limiting

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  3. fmt

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  4. Merge changes from branch 'subcell-limiting-positivity-nonlinear'

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  1. Fix variable_derivative routines for entropies

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  2. Relocate functions

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  3. Add entropy limiters

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  4. Update test errors after adding entropy limiting

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  5. Use calc_onesided_boundary from subcell-limiting-entropies

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  6. Adapt elixir

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Commits on Dec 26, 2023

  1. Fix estimated errors; Bug found in subcell-limiting-entropies

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  1. Merge branch 'main' into subcell-limiting

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  1. Fix allocations with multithreaded

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  2. Split mcl_bounds_delta into global and local

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  3. Add comment

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  1. Outsource code for saving bounds errors (#122)

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  2. Merge branch 'main' into subcell-limiting

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  1. Cancel some for loops for clarity and better parallelization capabi… 

    …lity (#123)

* Cancel some for loops for clarity and better parallelisation capability

* Fix last commit

* Fix again

* Move calculation of rho_limited

* Update comments
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  1. Merge branch 'main'

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  2. Merge branch 'main' into subcell-limiting

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  3. Clean up testing

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  4. Fix bug

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  1. Merge branch 'main' into subcell-limiting

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  1. Remove doubled foreach_enumerate

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  1. Merge branch 'main' into subcell-limiting

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  1. Merge branch 'main' into subcell-limiting

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Commits on Mar 27, 2024

  1. Use @Batch reduction for bounds check (#126) 

    * Use @Batch reduction for bounds check

* Remove section in documentation
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  2. Merge branch 'main' into subcell-limiting

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Commits on May 12, 2024

  1. Merge main (#127) 

    * Merge main (first version)

* Fix bug

* Fix setup in tutorial

* Adapt tests

* Add bar_states variable to unit test

* fmt
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  2. Merge branch 'main' into subcell-limiting

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  1. Merge branch 'main' into subcell-limiting

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  2. Fix tests

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    bennibolm committed May 14, 2024
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  3. Fix and adapt tests for saving deviations with MCL

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Commits on May 16, 2024

  1. Merge branch 'main' into subcell-limiting

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Commits on May 23, 2024

  1. Merge branch 'main' into subcell-limiting

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Commits on May 24, 2024

  1. Merge main: Remove dispatching for mesh types (#128) 

    * Add structured mesh support

* Fix non-periodic computation of bounds

* Use local limiting and nonperiodic domain in source terms elixir

* Use local limiting in free stream elixir

* Remove not needed lines

* Remove P4estMesh

* Add non-periodic tests with local bounds

* fmt

* Fix test

* Use `get_inverse_jacobian` instead of dispatching all routines

* Simplify `perform_idp_correction!`

* Revert stuff

* Remove free stream elixir

* Use sedov blast instead of source term setup; add news

* Update dispatching for mesh types

* Remove dispatching for mesh types

* Move new sedov tests within the test file

* Move new tests within test file

* Adapt dispatching

* Fix typo

* Remove not-needed parameter

* Add subcell limiting support for StructuredMesh (trixi-framework#1946)

* Add structured mesh support

* Fix non-periodic computation of bounds

* Use local limiting and nonperiodic domain in source terms elixir

* Use local limiting in free stream elixir

* Remove not needed lines

* Remove P4estMesh

* Add non-periodic tests with local bounds

* fmt

* Fix test

* Use `get_inverse_jacobian` instead of dispatching all routines

* Simplify `perform_idp_correction!`

* Revert stuff

* Remove free stream elixir

* Use sedov blast instead of source term setup; add news

* Update dispatching for mesh types

* Move new tests within test file

* Adapt dispatching

* Fix typo

* Remove not-needed parameters

* Dispatch `check_bounds` for dimension using u
    @bennibolm
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  2. Move save_bounds_check_errors to subcell_bounds_check.jl

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    bennibolm committed May 24, 2024
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  3. Fix newton loop with continue

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    bennibolm committed May 24, 2024
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  4. Merge branch 'main' into subcell-limiting

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Commits on Jul 25, 2024

  1. Fix boundary condition mixed for structured mesh (not used lines of c… 

    …ode)
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Commits on Jul 29, 2024

  1. Merge branch 'main' into subcell-limiting

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  2. Merge branch from subcell limiting p4est PR (#129) 

    Make sure I adapted everything correctly.
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Commits on Aug 28, 2024

  1. Merge branch 'main' into subcell-limiting

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Commits on Aug 30, 2024

  1. Merge branch 'main' into subcell-limiting

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Commits on Sep 20, 2024

  1. Merge main (#131)

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  2. Merge branch 'main' into subcell-limiting

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