An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
BSA-QTL Mapping in Drosophila Ananassae
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
This repository contains scripts used to collect and analyze data from whole genome sequences of clinical Streptococcus agalactiae (Group B Strep) isolates for the project described in the following manuscript: Pell, M.E. et al., bioRxiv, 2024-04-01.
An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP
ABBA-BABA test conducted on Saccharomyces cerevisiae strains using whole-genome alignment.
Data and code repository for study aiming to understand ESBL carriage in Blantyre, Malawi
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
Investigate the role of mtDNA in the sex determination of freshwater mussels with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.
GREMLIN: Genomic REarrangements by Machine Learning-based INspection
Analysis and plotting functions for structural variant breakpoint data
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
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