An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
A complete Snakemake pipeline for detecting allele specific expression in RNA-seq
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
GREMLIN: Genomic REarrangements by Machine Learning-based INspection
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
An app for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline in UK Biobank RAP
R-package to analyse and quantify aberrations in DNA-sequencing data
An app for automatically functionally annotating the variants of whole-genome/whole-exome sequencing (WGS/WES) studies and integrating the functional annotations with the genotype data using FAVORannotator in UK Biobank RAP
R tools to mine & craft somatic mutations from cancer genomes
Analysis and plotting functions for structural variant breakpoint data
Data and code repository for study aiming to understand ESBL carriage in Blantyre, Malawi
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
An app for summarizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies in UK Biobank RAP
Investigate the role of mtDNA in the sex determination of freshwater mussels with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.
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