hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
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Dec 17, 2024 - Python
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virome
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ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes
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Nov 15, 2022 - Python
ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data
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Sep 6, 2022 - Python
The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.
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Sep 19, 2024 - Python
discover-virome: identify and quantify viruses from metagenomic assemblies
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Jan 20, 2022 - Python
quantify-virome: identify and quantify viruses from metagenomic shotgun sequences
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May 29, 2020 - Python
A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.
machine-learning virus genomics metagenomics dna healthcare microbiology biodiversity oxford-nanopore virome voting-classifier binary-classifier long-read-sequencing viromics
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Apr 8, 2024 - Python
Viral contig analysis (hecatomb-lite)
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Nov 29, 2021 - Python
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