Source code and data for the tutorial: "Getting started with particle Metropolis-Hastings for inference in nonlinear models"

An R package for fitting state-space models to repeated measures of multiple individuals with covariates

R package pmhtutorial available from CRAN.

An age-based state-space stock assessment model for the stock of American plaice on the Grand Bank of Newfoundland.

Zipkin, E.F., Sillett, T.S., Grant, E.H.C., Chandler, R.B., and Royle, J.A. (2014) Inferences from count data using multi-state population models: a comparison to capture-recapture approaches. Ecology and Evolution. 4: 417-426.

a helper package for pomp

Himes Boor, G.K., T.L. McGuire, A.J. Warlick, R.L. Taylor, S.J. Converse, J.R. McClung, A.D. Stephens. 2022. Estimating reproductive rates and juvenile survival when offspring ages are uncertain: a novel multievent mark-recapture model applied to an endangered beluga whale population. Methods in Ecology and Evolution

A fork of Futia et al. (2024), extended with the patter algorithms

Modeling the COVID-19 Infection Rates by Regime Switching Unobserved Components Models

State-space models for statistical mortality projections

Create Multivariate Autoregressive State-Space Models with the MARSS R package

Bayesian State-Space Modeling of Mouse-Tracking Experiments via Stan

Learning resources for users of the `patter` R package