Raspir, the rare species identifier
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Updated
Oct 19, 2023 - Python
Raspir, the rare species identifier
Fungal Identification Pipeline
MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.
This repository contains code for preprocessing, training, evaluation, and inferencing of two models, SSD and Faster R-CNN, for the task of bird detection and classification. For details about the Flask web application built on this model visit the link below.
Image classification pipeline for natural sciences
Running inference on images to detect the species of animals and plants with the Microsoft AI for Earth Species Recognition Model
DNA barcoding analysis pipeline
A Flask web application for the classification of bird species built using TFServing, Docker and MySQL.
Parser of BLAST results
Running inference on images to detect the species of animals and plants with a image-recognition model trained on the iNaturalist 2021 Competition
A snakemake pipeline for tick determination from ONT whole genome sequencing samples.
Species identification model for Japanese dragonflies and damselflies
Image-based plant identification at global scale.
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