ClusterMap for multi-scale clustering analysis of spatial gene expression
Perform RESTORE normalization on multiplexed imaging data.
Multimodal Variational Autoencoder dedicated to omics data integration
A Lightweight & Versatile Visualization Tool for Spatial-Omics Data
R package to visualize colocalization for single cell & spatially-resolved genomics data
conST: an interpretable multi-modal contrastive learning framework for spatial transcriptomics
Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis
Dependency-aware deep generative models for multitasking analysis of spatial genomics data
ClusterMap for multi-scale clustering analysis of spatial gene expression
BANKSY: spatial clustering
Interoperability between SpatialData and the Xenium Explorer
a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
A Python package for identification Differential Spatial Expression Pattern (DESP) gene by interpretable deep learning from multi-slice spatial omics data.
Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.
Spatial analysis toolkit for single cell multiplexed tissue data
SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
A Toolbox for Spatial Transcriptomics Analysis
Interactive visualization of spatial omics data
End-to-end analysis of spatial multi-omics data
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