Lima - Demultiplex Barcoded PacBio Samples
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Oct 29, 2024 - R
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single-molecule
Here are 23 public repositories matching this topic...
A modular single-molecule analysis interface
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Dec 18, 2024 - Python
File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy (Sample data: https://gitlab.peulen.xyz/skf/tttr-data)
python single-molecule fluorescence imaging fluorescence-microscopy-imaging ptu flim becker fluorescence-correlation picoquant
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Dec 17, 2024 - C++
Burst analysis software for smFRET. **Moved to OpenSMFS organization**
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Mar 6, 2019 - Python
Detection of Molecules plugin for ImageJ, Utrecht University
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Nov 16, 2022 - Java
Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.
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Nov 11, 2024 - Jupyter Notebook
Implements a modified version of the CUSUM algorithm for robust detection of step-like changes time-series data
c bioinformatics single-molecule nanopore feature-detection dna feature-extraction digital-signal-processing time-series-analysis
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Jul 2, 2020 - C
MATLAB package to analyze single-molecule FRET data
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Oct 21, 2024 - MATLAB
Single-molecule force spectroscopy calibration
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Feb 22, 2024 - Python
A simulator for single molecule FRET experiments of freely diffusing particles.
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Jun 26, 2019 - Python
Single Molecule Fluorescence Simulator Toolkit
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Nov 7, 2021 - C++
ASCAM is Advanced Single Channel Analysis for Mac (and others)
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Jan 29, 2024 - Python
Maximum likelihood fits for low photon count data - For active develeopment visit gitlab.peulen.xyz
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Feb 12, 2024 - C++
This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.
python single-molecule analysis python3 hdf5 fluorescence spectroscopy fluorescence-intensity tcspc change-point-detection pyqt5-gui fluorescence-lifetime fluorescence-spectra time-taged-time-resolved tttr time-correlated-single-photon intensity-level-grouping photon-burst-detection lifetime-fitting
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Nov 21, 2024 - Python
mdtraj_fps ia a command line tool to calculate FRET observables form MD-trajectories
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Mar 14, 2018 - Python
Data analysis for Ingargiola et al. PLOS ONE (2017) doi:10.1101/085027
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Jun 26, 2017 - Jupyter Notebook
Single-moecule imaging and computation with RNA
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Jul 13, 2024
single molecule tracking
computer-vision single-molecule mathematica biophysics particle-tracking wolfram-language wolfram-mathematica
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Sep 16, 2020 - Mathematica
This Python library is designed to enhance the performance of single-particle tracking (SPT) algorithms by leveraging Cython.
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Oct 16, 2024 - Jupyter Notebook
Fitting DNA single-molecule force-extension curves in MATLAB
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Apr 23, 2017 - MATLAB
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