#

single-molecule-footprinting

Here are 5 public repositories matching this topic...

Krebslabrep / Kreibich_2023_5mC_at_enhancers

Analysis of Single Molecule Footprinting (SMF) data for the analysis of DNA methylation, chromatin accessibility and TF binding. The repository contains all primary code to reproduce the main analyses for the publication "Single molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation" (Kreibich et al., 2023)

transcription-factors epigenetics dna-methylation chromatin-accessibiity single-molecule-footprinting

Updated Feb 29, 2024
R

jkmckenna / smftools

Single Molecule Footprinting Analysis in Python

python machine-learning bioinformatics data-visualization protein-dna-interactions nanopore-sequencing chromatin-accessibiity single-molecule-footprinting

Updated Nov 25, 2024
Python

WENDYYCM / SAMOSA_ZMW_Selector_Script

Enhanced zmw_selector.py + New run_zmw_selector.sh

bioinformatics nucleosome-positioning chromatin-accessibiity single-molecule-footprinting

Updated Aug 6, 2024
Python

jkmckenna / smfplot

Python visualization of single locus SMF data

gene-regulation protein-dna-interactions single-molecule-footprinting

Updated Sep 10, 2024
Jupyter Notebook

fmicompbio / footprintR

Tools for working with single-molecule footprinting data

single-molecule-footprinting

Updated Dec 30, 2024
R

Improve this page

Add a description, image, and links to the single-molecule-footprinting topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the single-molecule-footprinting topic, visit your repo's landing page and select "manage topics."