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single-cell-proteomics

Here are 11 public repositories matching this topic...

immunogenomics / amp_phase1_ra

🌾 Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.

r jupyter-notebook autoimmune single-cell-genomics single-cell-proteomics immunogenomics

Updated Sep 23, 2020
Jupyter Notebook

CamaraLab / STvEA

Spatially-resolved Transcriptomics via Epitope Anchoring

immunohistochemical-images single-cell-rna-seq single-cell-proteomics cytometry-analysis-pipeline

Updated Apr 1, 2024
R

Terkild / CITE-seq_optimization

Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments

antibody cytometry single-cell-rna-seq single-cell-proteomics single-cell-omics cite-seq

Updated Mar 13, 2021
R

SlavovLab / pSCoPE

Prioritized Mass Spectrometry Proteomics. Prioritized Single-Cell ProtEomics by Mass Spectrometry code associated with the pSCoPE manuscript.

bioinformatics mass-spectrometry single-cell targeted-proteomics single-cell-analysis single-cell-proteomics

Updated Jan 4, 2023
R

IbrahimElzahaby / MSc_Thesis

Computational protemics analysis of cancer cell-lines at the level of single-cells

bioinformatics clustering dimensionality-reduction network-analysis kegg-pathway gsea psea correlation-analysis single-cell-proteomics gene-enrichment go-enrichment cancer-proteomics

Updated May 31, 2023
R

hylasD / tSpace

visualization computational-biology transcriptomics single-cell trajectory-analysis cytof flow-cytometry developmental-biology single-cell-rna-seq single-cell-analysis single-cell-proteomics

Updated Jun 29, 2020
R

SlavovLab / nPOP

Code for the research article "Exploring functional protein covariation across single cells using nPOP". It is distributed under MIT license.

regulation gene-regulation proteomics sample-preparation single-cell-proteomics protein-complexes single-cell-ananlysis

Updated Dec 27, 2022
R

hylasD / MATLAB_version_tSpace

visualization computational-biology transcriptomics single-cell trajectory-analysis cytof flow-cytometry developmental-biology single-cell-rna-seq single-cell-analysis single-cell-proteomics

Updated Mar 21, 2019
MATLAB

SlavovLab / early-stage-embryos

Here you will find scripts and related files that are behind analyses presented in "Proteome asymmetry in mouse & human embryos before fate specification"".

developmental-biology embryo single-cell-proteomics

Updated Sep 10, 2024
R

UCLouvain-CBIO / 2021_08_16_SCP_online

scp 2021 conference

scp bioconductor proteomics single-cell-proteomics scp2021

Updated Aug 16, 2021
HTML

SlavovLab / EMT_TGFB_2023

Dynamics of single-cell protein covariation during EMT. Analysis of TGF-B induced EMT in MCF10A cells using nPoP and SCoPE2.

emt single-cell-proteomics protein-covariation

Updated Jun 17, 2024
R

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