Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

Estimation of Promoter Activity from RNA-Seq data

Interactive R package to quantify, analyse and visualise alternative splicing

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

🌻 View single-cell RNA-seq and mass cytometry data in synovial tissues from patients with RA or OA.

Collection of scripts to map eQTL with RNAseq Data and Genotype by Sequencing

R package to create heatmaps using signature gene list and transcriptomic data

This is a repository for a pipeline used to identify imprinted genes or allele specific expressions using Illumina next generation sequencing (NGS) platform. This repository contains a work in progress to identify imprinted genes in polyploid species.

Sample Data for MMAPPR2

Scripts used to analyze tomato meta-transcriptome from short-read host RNA-seq data in Chialva et al. (2020)

A repository for RNA-seq workflow

Performing RNA-Seq data analysis and quality control using DESeq2 in R.

Useful R functions for Multi-omics analyses

Performing RNA-seq data analysis with DESeq2 package of bioconductor

Perform RNA-seq data analysis with edgeR package of bioconductor