Curated Metagenomic Data of the Human Microbiome

R implementation of the LEfSe method

Analyses in R and Python Using curatedMetagenomicData

Sample Metadata Curation for curatedMetagenomicData

A workshop on microbiome analysis using Bioconductor

For documenting issues related to BugSigDB curation.

16S rRNA Sequencing Data from the Human Microbiome Project

Curated Metagenomics Data Nextflow workflows

A microbial signatures database

Simple exploratory analysis of curated microbe signatures

A Command-Line Interface for curatedMetagenomicData

Benchmarking examples of lefser against LEfSe and microbiomeMarker

R-side access to published microbial signatures from BugSigDB

The Preprocessing Pipeline for curatedMetagenomicData

BugSigDB data files

BugSigDB Stats and Analysis

Genestack's Open Data Management (ODM) setup for curatedMetagenomicData curation

Preparation of datasets for MicrobiomeBenchmarkData