A python package for fast post translational modification localization, powered by Cython.
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Dec 15, 2023 - Python
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post-translational-modification
Here are 13 public repositories matching this topic...
Proteomics Mass Spectrometry Datasets for Machine Learning
spectrum machine-learning deep-learning annotations dataset proteomics mass-spectrometry ptm peptides retention-time peptide-sequences post-translational-modification fragment-ions
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Aug 16, 2024 - Python
Web scraper for UniProt and iPTMnet database
beautifulsoup protein-sequences uniprot webscraping webscrapping post-translational-modification iptmnet
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Jul 12, 2018 - Python
A machine learning tool to assign edges in protein-protein interaction networks with a function.
machine-learning bioinformatics protein-protein-interaction networks-biology post-translational-modification
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Feb 13, 2020 - Python
Toolkit for concretely describing non-canonical DNA, RNA, and proteins
dna methylation epigenetics protein rna phosphorylation dna-damage proteoform post-transcriptional-regulation post-translational-modification crosslinks
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Oct 5, 2020 - Python
CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid mod…
phosphorylation cwl secondary-structure cwl-workflow post-translational-modification glycosylation lipid-modification sumoylation cell-localization acetylation
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Sep 6, 2020 - Python
Code and datasets for the publication "Recurrent Neural Network-based Prediction of O-GlcNAcylation Sites in Mammalian Proteins"
machine-learning deep-learning recurrent-neural-networks artificial-intelligence artificial-neural-networks post-translational-modification glycosylation o-glycosylation
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Nov 27, 2023 - Python
Python implementation of BayesENproteomics with user-customised models and other additional features
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Jan 17, 2024 - Python
Protein Language Model (pLM) Powered Protein Crotonylation (Kcr) Modified Site Predictor
natural-language-processing transformers protein-sequences post-translational-modification protein-language-model crotonylation
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May 9, 2024 - Python
Validation of modified amino acid sites in peptide sequences by identifying immonium ions in the raw spectra (.mgf format)
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Aug 17, 2023 - Python
A machine learning tool to assign edges in protein-protein interaction networks with a function.
machine-learning bioinformatics protein-protein-interaction networks-biology post-translational-modification
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May 23, 2018 - Python
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Nov 13, 2019 - Python
data integration and network analysis of post-translational modification based on mass spectrometry data
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Apr 17, 2023 - Python
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