Software for prediction of plasmid sequences in metagenomic assemblies
This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
Predict plasmids from uncorrected long read data
code repo for mobileOG-db
A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
A tool to batch-generate optimal DNA primers for Sanger sequencing. Output .xlsx file is directly compatible with IDT Oligo Entry.
A method for next-day high-throughput full plasmid sequencing from colonies
A simple python plasmid map creator
Detect and quantify plasmid DNA contamination in sequencing data
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