Data preprocessing scripts and preprocessed data storage for COVID-19 Scenarios project

Coronavirus genome analysis.

🍄 spora: Streamlined Phylogenomic Outbreak Report Analysis

A Telegram bot to get the data of the COVID-19 (novel coronavirus) outbreak in Italy

ArcGIS Pro toolbox to extract and transform case and contact data from a Go.Data instance

A Discord bot created to track the COVID-19 outbreak

This geospatial project maps Marburg virus transmission, a zoonotic disease with high case fatality rates in Africa. It highlights the need for medical treatment, isolation, and quarantine measures. Vaccines and contact tracing can limit the global spread of epidemics

End to end Snakemake workflow for DENV-1 and DENV-2. FastQC, Trimmomatic, Picard, SPAdes, BWA, bcftools masked consensus at depth 10, MAFFT, IQ-TREE with GTR+G+I, BLAST driven context fetching, polyprotein translation and mutation tables. Includes full references and citation.

OUTBREAK! is a dashboard that automatically identifies potential outbreaks of CDC nationally notifiable diseases using weekly data and DeepAR forecasting on AWS.