eds-scikit is a Python library providing tools to process and analyse OMOP data

OMOP standardization pipeline for ICU databases

Extracting Patients' information from clinical notes and export them to an OMOP CDM database.

Streamlined Data Mapping to OMOP

FHIR to OMOP using PySpark on AWS Glue

An ETL pipeline to transform your EMP data to OMOP.

The OMOP Common Data Model(v6) implemented in Django (v3)

The work of OMOP on the dbt for demo in OHDSI Symposium 2022

Load OHDSI Vocab from Athena into PostgreSQL DB

core of pymedext source

A Python data class representation of the Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM)

Federated summary algorithm for a RDB following the OMOP CDM and using Vantage6

Translational Computational Phenotyping

omopsurvey python package

This pilot project deploys a supplemental OMOP table to map external measures of rurality (RUCC and RUCA).

SQLAlchemy Declarative Mapping Models for OHDSI OMOP CDM

Script to convert OMOP NOTE table to NOTE_NLP table

Yet Another OMOP Loader is a tool designed to load data into an OMOP Common Data Model Postgres database. It includes functionality to check the state of the database and handle various command line arguments to support pipeline operations.

Deletion of unwanted content from OMOP CDM

Custom Airflow operators and hooks, that help to upload our raw hospital data to Google Cloud.