Source ontology files for the Gene Ontology
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Nov 7, 2024 - Makefile
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OBO Foundry
The mission of the OBO Foundry is to develop a family of interoperable ontologies that are both logically well-formed and scientifically accurate. To achieve this, OBO Foundry participants follow and contribute to the development of an evolving set of principles including open use, collaborative development, non-overlapping and strictly-scoped content, and common syntax and relations, based on ontology models that work well, such as the Operations Committee with Editorial, Technical and Outreach working groups.
Here are 253 public repositories matching this topic...
The Ontology for Biomedical Investigations
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Nov 6, 2024 - Python
Data transformation framework for LinkML data models
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Nov 6, 2024 - Python
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Nov 6, 2024 - Makefile
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
open-source
metadata
bioinformatics
annotation
semantic-web
ontology
open-science
obo
life-sciences
biocuration
ontology-registry
obofoundry
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Updated
Nov 6, 2024 - Python
Terms for annotation of vertebrate trait data
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Nov 5, 2024
Mondo Disease Ontology
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Nov 7, 2024 - Jupyter Notebook
Standard terms for annotating mammalian phenotypic data
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Nov 5, 2024 - Makefile
An ontology of cell types
genomics
semantic-web
owl
ontology
transcriptomics
anatomy
metazoa
monarchinitiative
obofoundry
cell-ontology
cell-types
anatomy-ontology
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Updated
Nov 7, 2024 - Makefile
The home of the Drosophila anatomy ontology
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Nov 5, 2024 - Jupyter Notebook
LLM-based ontological extraction tools, including SPIRES
nlp
ai
information-extraction
named-entity-recognition
language-models
ner
data-modeling
relation-extraction
monarchinitiative
obofoundry
gpt-3
linkml
large-language-models
llm
oaklib
chat-gpt
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Nov 5, 2024 - Jupyter Notebook
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
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Nov 5, 2024 - Python
RO is an ontology of relations for use with biological ontologies
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Nov 6, 2024 - Jupyter Notebook
Simple Standard for Sharing Ontology Mappings
tsv
mapping
owl
monarchinitiative
mapping-tools
obofoundry
sssom
mapping-standards
metadata-elements
linkml
mapping-commons
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Nov 5, 2024 - Python
My personal website, served at https://cthoyt.com
machine-learning
bioinformatics
deep-learning
toxicology
cheminformatics
wikidata
artificial-intelligence
drug-discovery
drug-repurposing
ontologies
biological-expression-language
biocuration
knowledge-graph-embeddings
obofoundry
utterances
target-prioritization
knowledge-graphs
target-validation
proteochemometrics
drug-synergy
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Nov 5, 2024 - HTML
🗄️ Conversion of biomedical nomenclatures like HGNC to OBO
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Nov 5, 2024 - Python
Bootstrap an OBO Library ontology
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Nov 5, 2024 - Jinja
Released 2003
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- OBOFoundry
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- www.obofoundry.org
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