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@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

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  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 239 54

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 48 4

  3. MAxO MAxO Public

    Medical action ontology

    HTML 54 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 16 3

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Python 19 6

Repositories

Showing 10 of 243 repositories
  • medgen Public

    MedGen ingest.

    monarch-initiative/medgen’s past year of commit activity
    Python 1 0 9 0 Updated Jan 26, 2025
  • omim Public

    Data ingest pipeline for OMIM.

    monarch-initiative/omim’s past year of commit activity
    Jupyter Notebook 7 3 64 3 Updated Jan 26, 2025
  • rppr_stats Public
    monarch-initiative/rppr_stats’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 25, 2025
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 641 BSD-3-Clause 86 62 8 Updated Jan 25, 2025
  • monarch-initiative/vertebrate-breed-ontology’s past year of commit activity
    Makefile 12 1 55 5 Updated Jan 25, 2025
  • hpotools Public

    Human Phenotype Ontology tools

    monarch-initiative/hpotools’s past year of commit activity
    Java 1 MIT 0 1 0 Updated Jan 25, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 239 CC-BY-4.0 54 425 (3 issues need help) 41 Updated Jan 25, 2025
  • phenio Public

    An integrated ontology for Phenomics

    monarch-initiative/phenio’s past year of commit activity
    Makefile 6 BSD-3-Clause 0 19 1 Updated Jan 24, 2025
  • mondo-ingest Public

    Coordinating the mondo-ingest with external sources

    monarch-initiative/mondo-ingest’s past year of commit activity
    Jupyter Notebook 6 3 230 (1 issue needs help) 17 Updated Jan 23, 2025
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Python 19 BSD-3-Clause 6 188 (3 issues need help) 9 Updated Jan 22, 2025

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