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linkml hacking
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linkml hacking
335 followers · 41 following

Achievements

Achievement: Starstruckx3Achievement: Pair Extraordinairex2Achievement: Galaxy BrainAchievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx4

Achievements

Achievement: Starstruckx3Achievement: Pair Extraordinairex2Achievement: Galaxy BrainAchievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx4

Highlights

  • Pro

Organizations

@bioperl @GMOD @berkeleybop @obophenotype @owlcs @monarch-initiative @VirtualFlyBrain @ga4gh @Planteome @geneontology @CTDbase @globalbioticinteractions @MatchmakerExchange @owlcollab @EnvironmentOntology @phenopackets @evoldoers @NCATS-Tangerine @linkml

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cmungall/README.md

Chris Mungall (@cmungall)

Computer Research Scientist at Berkeley Lab.

Interests: AI / Ontologies / Bioinformatics. Projects: GO, Monarch, Alliance, OBOFoundry, NMDC

GitHub GitHub Sponsors Twitter @chrismungall PGP/GPG Key

GPT-3 Summary

Weekly :

TODO

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  1. obophenotype/uberon obophenotype/uberon Public

    An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology

    Emacs Lisp 131 29

  2. geneontology/go-ontology geneontology/go-ontology Public

    Source ontology files for the Gene Ontology

    Makefile 220 40

  3. geneontology/obographs geneontology/obographs Public

    Basic and Advanced OBO Graphs: specification and reference implementation

    Java 64 12

  4. evoldoers/biomake evoldoers/biomake Public

    GNU-Make-like utility for managing builds and complex workflows

    Prolog 101 9

  5. monarch-initiative/ontogpt monarch-initiative/ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    Jupyter Notebook 576 72

  6. linkml/linkml linkml/linkml Public

    Linked Open Data Modeling Language

    Python 310 96